Elaeis guineensis (African oil palm): 140855543
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Entry
140855543 CDS
T03921
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140855543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
140855543
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140855543
mRNA degradation factors
5'-3' decay
Decapping complex
140855543
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
140855543
NCBI-ProteinID:
XP_073107584
UniProt:
A0ACM7C243
LinkDB
All DBs
Position
2:complement(4547365..4550106)
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AA seq
689 aa
AA seq
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MQEADFSNWIDENILDAEHFQDGKRWWSQPRPSSSRLSESKSLYRTSSYPQQQPQQHSSE
PILTPKSSFTSYPPPGGRSHISPNLTRHASIPSLTAGLQMTPPNLSPFSGPQHHLAGLMH
GLHYGGNMSQFASPGLSFNNRPQHHWLNQASLFAGEHPNLLPNFLQQHLPQPNGSVPSQL
LLQQQQQRVQQVQPCLPHFSRLQSPLVSSHPPEIMNKLDAVLGISDLRDQRSKPSQRGKQ
NMRFPQQSSDTSSQKGDNGWPQFRSKYMSAEEIESILRMQNAATHSNDPYIDDYYHQACL
AKKSAGSRLKNHFCPTFIRDLPSRARANNETHAFLQVDALGRVAFSSIRRPRPLLEVDLP
SASGDGVHEQKSSVKPLEQETMLAARITIEDGLCLLLDIDDIDRMLQFSQPQDGGFQLRR
RRQVLLEGLAASLQLVDPLGPVKAGHSGGLAPKDDLVFLRLASLPKGRKLLSRYLQLLIP
GSELTRIVCMAVFRHLRFLFGGLPSDSSAAETTINLAKTVSSCVCSMELSALSACLAAVV
CSSEQPPLRPLGSSAGDGASMILKSVLDRATDLLTDXHATSNYSMSNRALWQASFDAFFG
LLTKYCLSKYDSILQMLLMQALDTSIIGSEAARAISREMPVELLRASLPHTNEHQRKMLL
DFAQRSMPVTGFSVHGSGSGPVTSESVPG
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaggcagatttttcaaactggattgatgagaatatattagatgctgaacatttt
caggatggtaaacgatggtggtcacaaccacgtccttcgtcatctcgtctttcagaatca
aaatccctgtatagaacatcctcatatcctcaacaacagccacaacaacactccagtgaa
ccaattcttacacctaaatcatctttcacatcctaccctccacctggtggacgatctcat
atttcaccaaacctcacacgtcatgcaagcattccatccctaactgctgggcttcagatg
actcctccaaatctctcacctttttctggtccacaacatcatttggcaggactaatgcat
ggattgcattatggtggaaacatgtctcaatttgcctctccaggcctctcttttaataac
cggccgcagcatcactggttaaatcaagccagcctatttgcaggggaacatccaaatctg
ctgcctaacttcctacagcaacatttgccacagccaaatggctcagtgccttcacaacta
cttctgcagcagcaacagcagagagtgcaacaggtccaaccatgtctgcctcatttttct
cgcttgcagtctcccttagtcagctcccatcctccggaaataatgaataagcttgatgca
gttcttggtatatctgacttgagagaccagagatctaaaccatcacaaagaggaaaacag
aacatgcggtttcctcaacaatcttctgataccagcagccagaagggtgacaatgggtgg
ccacagtttaggtccaagtacatgtcagctgaagagattgaaagcattttgagaatgcag
aacgctgcaactcacagcaatgatccatatatagatgattactatcaccaagcttgtctt
gcaaaaaagtctgctggttcaaggctgaagaaccatttctgtccaacatttattcgagat
ctgccttctcgggcaagagctaataatgagacacatgcatttcttcaggttgatgcactt
gggagggttgcattttcatccattcgtaggcctcgccctctccttgaagttgatctgcct
tcagcctcaggtgatggcgtccatgaacagaaatcttcagtaaagccccttgaacaagag
acgatgctggcagctagaatcaccattgaagatggtctttgcctcctccttgatatagat
gatattgaccggatgttacagtttagccaaccacaagatggtggcttccagctgagacgg
aggagacaagtccttttggaaggccttgcagcatctcttcagctcgttgatccacttggc
ccagttaaggctggtcactcaggtgggcttgccccaaaagatgatcttgtgtttcttcgc
ctagcatctcttcctaagggccggaagcttctgtcacgctaccttcagcttcttattcct
ggcagcgagctcactcggatagtctgtatggccgttttccggcacctacgttttctattt
ggtggtttgccatcagattctagtgcagcagaaacaacaataaatcttgccaagactgtt
tcttcatgtgtatgcagtatggagctaagtgcactcagtgcttgccttgcagctgtcgtt
tgctcatctgaacagccacctcttcgcccacttgggagttcagctggtgatggagcatcg
atgattttaaaatctgttctcgacagagcaacagaccttttgacagacncccatgctaca
agcaactacagcatgtctaaccgagctctttggcaagcatcatttgatgccttttttggg
cttcttaccaagtattgtctgagtaaatatgacagtatattgcaaatgttgctcatgcag
gcacttgacacttcaatcattgggtctgaagctgccagagctataagcagggagatgcct
gtggagctgctacgtgcgagcctgcctcatacaaatgagcaccagcgcaagatgttgctt
gattttgctcagagatccatgcctgtaactggttttagcgtccatggaagtggcagtggt
cctgtgacctcggaatcagttcccggctaa
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