Elaeis guineensis (African oil palm): 140857144
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Entry
140857144 CDS
T03921
Name
(RefSeq) LOW QUALITY PROTEIN: SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
140857144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
egu03400
]
140857144
DNA repair and recombination proteins [BR:
egu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
140857144
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
140857144
NCBI-ProteinID:
XP_073111703
LinkDB
All DBs
Position
4:13795507..13805084
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AA seq
1391 aa
AA seq
DB search
MDCVARRTRSRRALSGGAWLAVTSRLRGRGAAVHSSGDGVSGSSSAGGGREVAGISDSPA
GLGFHERSDTSVGTPGPEVIVLDDDGEEEDGGRGIGGDCKKGSSSKGNGGRRSSRKSTYV
DEAVELGAGPPPPGFWKGGESGSSSDRKAVIAVSDLKGDDSEATVEDRTRSKSGSNDVKS
ASWSGSDAASGGLNACDHEAREGEMLEVNVADRKLEAKEACDAGGEREIDEIEDCNGEVE
VLETNDANVEEKDQEFEVDEGGTHEVHEPNIKSGSQESQQTGKQGVSHNLVGTNGERKDQ
EFEIADRKTHEVCEPDVEFRAQESQQTGKERGSHNLADANGERKDQDVEVDEGKTHEVHE
PNVEFEAQECQESGRKDGSNILADAGGRMDVLDINGADEEEDAEIGSDTRSAQEVKYLVT
TSCVARRTRSKMGKQRRVSYTQYFNVELSDDSEDEEDDEEEEEEDDSCYESDNAEAENTR
IMSESGQKECGENGQSYKVKPDVRSFGGEVREDPANGSIAVAHHARSCFDSEPHKKKPKV
EFAGNPLCINVDESDSEDKFCFSSGTDNGKGSGRKNQIKSGGGGNRIDMEWREWTRREEP
WLVKTKKRKRLQSLKNTCLFNLLVDTICNEQKKLTENLVSPKEQCSPSNVKPSCNKDIFP
CIFSFADEDDKSIEKSDFEKVLDELWADLEFALESNNIGTYNNDEGQIEVDILEDESDLL
TLCSQGKHQFILDERIGTRCKFCSFVNMEIKYIIPSLATHICEGSARINSAKVEGTLLFD
DLCRTVKDDGKPNSCGLPKGTVWELIPGIKDKMYEHQQEAFEFMWKNLAGGIDLDELKSG
ARSDVIGGCVISHAPGTGKTRLSIIFIQTYMKVFPECRPVIVAPSGMLLTWEEEFRKWNV
DVPIHNLNAPDYSGREDIAFRQLAAKEHRNISLMRLVKLYSWVKGSSILGISYGLFKKLT
ADNSCDPKLSQVLLERPGLLVLDEGHTPRNERSLIWKALGKIKTEKRIILSGTPFQNNFG
ELYNIMCLVKPKFAEKISIRPSKQGQRKAKFFSDMDQDFLPEKNEGKGIWVSLTNHVTDD
NAEEVRSILKPFVHIHSGNILNTLPGLRECVIELDPPPHQKDIIEKMEHIGSNVIFENEY
KTSLASIHPSLVTYLNLSEEEETLLDRPLLEKQKLNPYIGVXTRFVMEVVRLCEALKEKV
LIFSQYIQPLSMIKDQLIKLFNWSEGKEVLQMDGKIRTKYRQSSIDIFNDMESEARVLLA
STKACCEGISLTGASRVVLLDVVWNPAVGRQAISRAYRIGQKKFVYTYNLMTSGTGERDK
YDRQAKKDHLSKLVFSTEIDFTNVRKSSSQAKEQHSSKLISEDKILEEMTAHDKVKGMFL
KIYYPPKGICA
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atggattgcgtcgcgagaagaacgcgcagccggagggccctaagtggaggggcctggctc
gcagtcacgtcccgcctccgcggacgcggtgccgccgtgcactccagcggcgatggcgtg
agcggctcctcctccgccggcggagggcgggaggtggctgggatttcggattcccctgct
ggattgggattccatgagaggagcgacacttcggttgggacaccgggcccggaagtgatc
gtcctcgacgacgacggtgaggaggaggatggaggaagaggaattggtggggattgcaag
aaagggtcttcttcgaaggggaatggcggccgccggagttctcggaagtccacttacgtg
gatgaggcggtggaattgggagctgggccaccaccaccggggttctggaaaggaggggag
tccgggtcgtcctccgatcggaaagcggtcatcgctgtatcggatctcaagggtgacgat
agcgaggccaccgtggaagatcgaacgaggtcgaaatcaggttctaatgatgtaaaatcg
gcttcttggagcggttcagacgctgctagtgggggattgaatgcttgcgatcatgaagca
agagaaggggaaatgcttgaagtcaatgttgccgatagaaagttggaagctaaagaagcc
tgtgatgccggtggagaaagggaaattgatgaaatcgaggattgtaatggggaagttgaa
gttctagaaactaacgatgctaatgtagaagaaaaagatcaggaatttgaggttgatgaa
gggggaacccatgaagttcacgaacccaatatcaaatctggatctcaagaatctcaacaa
actggcaaacaaggggtaagtcacaatcttgtcggcaccaatggagaaagaaaagatcag
gaatttgagattgctgacaggaaaacccatgaagtttgtgaacccgatgttgaattcaga
gctcaagaatctcaacaaactggcaaagaacgggggagtcataatcttgctgatgccaat
ggagaaagaaaagatcaggatgtcgaggttgatgaagggaaaacccatgaagttcatgaa
cccaatgtcgaatttgaagctcaagaatgtcaagaaagtggcagaaaagatggaagtaac
attcttgctgacgctggagggcggatggatgtgttggacattaatggtgctgatgaagaa
gaggatgctgagataggcagtgacacaagaagtgctcaggaagttaagtatttggtgaca
acttcttgtgtcgcaaggaggactcgatcgaaaatggggaagcagaggagagtgtcgtac
actcaatacttcaacgtggaattgtcggatgattcggaggacgaggaggatgacgaagag
gaggaggaggaagatgactcctgttatgaaagtgacaatgctgaggctgagaacaccagg
ataatgagcgaaagtggccagaaggagtgtggggagaatgggcagagctacaaggttaag
ccagatgtaagaagtttcggtggtgaggtccgtgaggatcctgcaaatgggagtatagca
gttgctcaccatgctcgatcttgttttgattcagagcctcacaagaagaaaccgaaggtt
gagtttgcaggtaatccactctgtataaatgtggatgaatcagactcggaggacaagttt
tgtttctcatctggtacggataacgggaagggcagtggcagaaagaatcagattaagagt
ggtggcggcggcaacaggatagatatggaatggagagaatggacaaggcgagaggaacca
tggctggtgaaaaccaagaagagaaagcgtttgcagtcattgaagaatacctgcctcttt
aatctccttgttgataccatttgcaacgaacaaaagaagcttacggagaatttggtttct
cccaaggaacaatgttctccatcaaacgtgaaaccgtcttgcaacaaggatatatttcca
tgcatattctcgttcgcagatgaagatgacaaatctattgaaaagtcagattttgagaaa
gtgctggatgaattatgggctgatttggaatttgctctagagtcgaacaatattggtacc
tacaataatgatgagggtcaaatagaagttgatatactagaggatgaatccgatctattg
acattatgttctcaagggaaacatcagtttattcttgatgagcggataggaactagatgc
aagttctgctcctttgtgaatatggagatcaaatacataataccatctttggcaacacac
atttgcgaagggtcagctaggataaactctgctaaggtggaaggcacacttttatttgat
gacctttgtagaacggttaaagatgatggtaaaccaaattcatgtggtcttccaaaggga
actgtatgggaactcattccggggattaaggataaaatgtatgaacatcagcaggaagca
tttgagtttatgtggaaaaatcttgctggaggaattgaccttgatgagctgaagtccggt
gctagatctgatgtcattggtgggtgtgtgatttcacatgccccagggacaggaaagacg
cgattatcaataatctttatccaaacatacatgaaggttttcccagaatgcagacctgta
attgtcgctcctagtggaatgctcctcacgtgggaagaagaattcagaaaatggaacgtg
gacgttccaattcataatttgaatgctccagactactctgggagggaagatattgccttc
cgtcagttggcagcaaaagaacatcgaaatatcagtttaatgcgtctagtgaaattatat
tcatgggtcaaaggtagcagtatcctaggaataagctacggcttgttcaaaaagctaaca
gcagacaactcttgtgacccaaaattgagtcaggtcctgcttgagaggccaggtttgctt
gttcttgatgaagggcacacacccagaaatgaacgcagtctcatttggaaggctctggga
aaaatcaaaacagaaaaacgtatcatcctttctggaactccttttcaaaataattttggg
gagctttacaatattatgtgtctggtaaaacctaaatttgctgaaaagatctcaattaga
ccatcaaaacaaggtcaaagaaaggcaaaattcttctcggatatggatcaagacttctta
ccagaaaagaatgaaggaaaagggatttgggtttctctaactaatcatgttactgatgat
aatgcagaagaagtaagatcaatattaaaaccatttgtgcatattcatagtggcaatatc
ctcaacactcttcctggtttgagggaatgtgtaattgaattagatccaccacctcaccaa
aaagacatcattgagaaaatggaacacatcggatcgaatgttatctttgagaatgaatat
aagacctccctggcttctattcatccttcattagtcacttatttgaacttgtctgaggag
gaggaaactcttttagacagacctttgctagagaaacagaagttgaacccctatataggg
gtgnaaacaagatttgtaatggaagttgttcgactttgtgaagcattaaaagagaaggtt
ttgattttcagtcagtatattcagccactgtctatgataaaggaccaactgatcaagtta
ttcaactggagtgaagggaaggaggtgttacagatggatggcaagatccgcacaaaatat
cgtcaatcctcaattgatattttcaatgatatggaaagtgaagcaagggtgctgcttgca
tcaacaaaggcttgctgtgaagggataagcctaaccggagcttcaagggttgtacttctg
gatgttgtgtggaacccagcagtagggagacaagccatcagccgagcatatagaattggg
cagaagaaatttgtgtacacttacaacctgatgacaagtggaacaggggaaagagacaaa
tatgacagacaagctaaaaaggatcatctttctaaattagtgttttccactgaaattgat
tttactaatgtcagaaagagttcatcacaggccaaagagcaacactcatctaaattgatt
tccgaagataaaattttagaagagatgaccgcacatgacaaagtaaagggcatgtttctg
aagatttactatccaccaaagggtatatgtgcttaa
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