Elaeis guineensis (African oil palm): 140858071
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Entry
140858071 CDS
T03921
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140858071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
140858071
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140858071
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140858071
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
140858071
NCBI-ProteinID:
XP_073113631
LinkDB
All DBs
Position
5:complement(12206647..12218356)
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AA seq
661 aa
AA seq
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MSGLLNSTLNGSTSNLPDSTGRPFTSSFSAQAATTPGFHHSGGLQGLHNIHGSFNIPNMP
SSLASRNVAMSGVPSSGVQQPGGNISGGRFTSNSIPVALSQISHGSGVSSRGAINVVGSP
AFSSSMSGVGGSIPGISSSSATAGNRSSVPGLGVSPILGNVGPRITSSMGNMVGGGSMGR
SISSGGLSVPGLASRVNLAANSGAGNLNVQGPNRLMGGMLQQAAPQMLGMLGNSYPTSGG
PLLQSQIQGGNNALSSMGMLNDVNSNDSSPFDMNDFPQLTGRPSSAGGPQGQLGSMRKQG
VGVNSIVQQTQEFSIQNEDFPALPGFKGGSSDYSVDLHQKEQLQENVPMMQSPHFSMARS
SGFSLGGTYPSNRQQQQQHAAAVSSAGVTYSPGNNQDLIHLHGSDLFPSSHGTYHSQMQN
SGPPSIGLRSLSSTNAASGMGAYEQIIQQYQHPHNQSPFRLQQMSAVNQSYRDQSLKSMQ
GIQTAPDRFGLLGLLSVIRMNDPDLTSLALGIDLTTLGLNLNSSDNLHKTFGSPWSDEPA
RGEPEYCIPSCYYAKQPPPLQQGYFSRFNVLTLFYIFYSMPKDEAQLYAASELCSRGWFY
HKEHQLWFTRANVEPLVKTQTYERGTYVCFDPNTWETRTKENFVLQYEAVDKKPTLPSAR
P
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttgcttaattcaacacttaatggttcaacatcaaatcttccagactcgact
ggcaggcctttcacatcttcattttcagctcaagctgcaacaactccaggttttcatcac
tctggtggtctgcaagggctgcacaacattcacggaagctttaacattccaaacatgcca
agctcacttgcatccaggaatgtggcaatgagtggtgtcccatcaagtggtgttcagcaa
ccaggtggaaacatatctggtggacgattcacatcaaacagtattccagttgctttgtct
cagatttcacatggttctggggtaagcagtagaggggccattaatgttgtaggaagccct
gcatttagtagtagtatgagtggagttggtggttcaatacctgggatttcctcgagctct
gctactgctggcaaccgtagttctgttcctgggttgggcgtatctccaattttggggaat
gtaggtcctcgaataacaagctcaatggggaacatggttggtggaggaagcatgggaaga
agcataagctctggaggattgtctgttcctggcctcgcttctcgtgtaaatttagctgct
aatagtggagcagggaaccttaatgtacagggaccaaacaggctgatgggcggcatgctt
caacaagcagcacctcaaatgcttggtatgcttgggaactcttatcctacttctggagga
ccattattgcagagtcaaatacaaggagggaataatgcattaagctctatggggatgttg
aatgatgtcaactccaatgatagttctccctttgatatgaatgattttcctcaattgacc
gggagaccaagttcagctggaggcccacaaggacaattgggttcaatgcgcaagcaagga
gttggtgttaactccattgtccaacaaacccaggaatttagcatccaaaatgaagatttt
ccagctttgcctggatttaaaggtggcagctcagattattctgtcgatttgcatcagaag
gaacaacttcaagagaatgttcctatgatgcagtcaccgcacttcagtatggcaagatct
tctggatttagcttaggagggacttacccatccaaccgtcagcaacaacagcagcacgct
gcagcagtcagcagtgctggggttacatattcacctggaaacaatcaagatcttatccat
ctacatggatctgatttatttccatcttctcatggaacctatcactcccagatgcaaaat
agtggaccacctagcattggattgagatcattaagctctacaaatgcagcttctggcatg
ggagcatatgagcagatcattcagcaatatcaacacccacataatcaatctccatttcga
ctgcagcagatgtctgctgttaatcaatcatacagagatcagagtttgaagtccatgcaa
gggatacaaactgctcctgatcggtttggcttacttggtttgttaagcgttattaggatg
aacgatccagacctgacatctcttgctttaggaattgacttgaccactttggggttgaat
ttgaactcatcagataatcttcataagacatttggatctccatggtctgatgagccggcc
agaggagagcctgagtattgcattccatcttgttattatgccaaacagccacctccacta
cagcaaggatatttttcacggtttaatgtgttgacactgttttacatcttttacagcatg
ccaaaagatgaagctcagctttatgctgcttctgaactatgctcacggggatggttctac
cacaaagagcaccaattatggttcacaagagcaaacgtggagcctctggtcaagactcag
acatatgaaaggggaacctatgtctgtttcgatccaaacacatgggaaactagaactaag
gaaaattttgttctccaatatgaggcagtggataagaagccaactctcccttctgcacgc
ccttaa
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