Egretta garzetta (little egret): 104122543
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Entry
104122543 CDS
T05152
Symbol
COL18A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
egz
Egretta garzetta (little egret)
Brite
KEGG Orthology (KO) [BR:
egz00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
egz04147
]
104122543 (COL18A1)
00535 Proteoglycans [BR:
egz00535
]
104122543 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
egz00536
]
104122543 (COL18A1)
Exosome [BR:
egz04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104122543 (COL18A1)
Proteoglycans [BR:
egz00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
104122543 (COL18A1)
Glycosaminoglycan binding proteins [BR:
egz00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104122543 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
104122543
NCBI-ProteinID:
XP_035746143
LinkDB
All DBs
Position
Unknown
AA seq
1704 aa
AA seq
DB search
MAPAPPHLGFLLLLACCFSSSETQLLDWIWGNTKTTGSPAAPSEGTAAPEPLASAAAPTP
SASPGTWGGQVVGGVTIPQRQEPDDTTAAPAGKGTTAENTEQWDGNATGLVENTAQPSIT
PPHTTLPAPGQDEASSSTEDPQLPGTGTTKDPQLLGTGPPAATGTWVSLQRPAGPWPGSA
PFPFSPGDGTHEQAVPPWDPMAQMPQHRHGASPAPPNLRHGTGRQGLVLAGMNGSQSPPL
PNRRAANSVDPPLADNASPREFDLLTAAARLYGSGAGLASFLPRLMPPAGHCLPVPTRLP
FCSVLATDHFRLPNYLRHSSEVEIWAALHEWEGLLESRCHRYVEWFLCLLLLPGCSALVP
ITPPPCQGFCEAIRDQCWTHLAGGRLPLPCDALPEEDEGYSCIFINASAENLNTEVSLLE
LIGDPPPEEILKIYGPDNSPGYVFGPNANTGQVARYHLPSPFYRDFSLLFHIQPTTPRAG
MLFAITDSSQSIIYVGVKLSELRVGKQQIIFYYTEPGSPRSYAAATFTVPTLLNQWTRFA
ISVEEDEVVLYLDCEEHERVHFERSPDEMELEDGSGLFVAQAGGADPDKYQGVIADLRLQ
GDPRAAERQCEEEEDDTEEVSGDFGSGAEGGHQPSGKDRDVPGLVDAVPVTSPPVAAGGG
PKSSGGSPQQAERTRAEETLRVSTGGTGPKGEKGEKGERGLKGDSGTSSIVGTGSVKGEK
GEKGELGIKGSAGFGYPGSKGQKGEPGNPGPPGTLARHTDGLMVEQVTGPPGPPGKDGAP
GRDGEPGDPGEDGKPGDMGPQGFPGTPGEPGLKGEKGDPGVGPRGPPGPPGPPGLPGPSS
KHDKLTFIDMEGSGFAGDLESLRGPRGPPGPPGPPGVPGLPGEPGRFGMNLTDLPGPPGL
PGRDGTPGPPGPVGPQGPPGRDGAAGQAGPKGERGDMGDLGLPGAPGPKGSKGEMGPAGA
PGEMGLAGLPGPIGPRGQPGPPGPPGPPGPGYEVGFGDMEGSGLPFTASSPGPPGPEGPQ
GVPGLPGVKGEAGSPGQPGLPGPKGDAGVPGVDGRPGLEGFPGPQGPKGDRGSPGEKGER
GQDGVGLPGPPGPPGPPGQVITVSSEDKSLVALPGPEGRPGHAGFPGPVGPKGDRGSSGP
QGSPGLKGEKGEPGVIISPDGTMVTSKVKGEKGEPGLQGPMGPSGPQGRAGMKGEIGFPG
RPGRPGMNGLKGEKGDPADVSSVLGLRGPPGPPGPPGPPGPPGNIVYDSSNAFSDSSHPS
LPGFHQFPGQKGEKGDAGAPGPPGHFPYDLSHFGANLRGDKGEAGPKGEKGEPGSIPLYG
PSVSGLPGPPGPQGYPGLPGPKGDSIVGPPGPPGPQGXXXXXXXGRGPPAPPGPPGPPSF
PGPHRQAISIPGPPGPPGPPGPPGTSGTSLGLRTLPTYQAMLSAAHELPEGGLVFLTDRQ
ELYVRLRGGFRRVLLEEHTLIPSSALDNEVYDKPPTXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXRPDPAPVAAHVHQDFQPALHLVALNAPLSGSMRGIRGADFQCFQQARQV
GLAGTFRAFLSSRLQDLYSIVRRADRATVPIVNLRDEVLFSNWEALFTGSEAPLRAGARI
LSFDGRDILRDMGWPQKSIWHGSDAKGRRLPESYCETWRTEEHTATGQASSLGSGKLLEQ
VASSCQHAFIVLCIENSFMTATKK
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atggccccagccccacctcacttgggctttctgctcctcctggcttgctgcttctcctcc
tccgaaacacagctcctggactggatttggggcaacacaaagaccacaggaagcccagca
gcacccagcgagggaactgcagcaccggagccacttgcctctgcagcagctcccaccccc
agtgcatccccagggacatggggtggccaggtggtggggggggtcaccatcccacagcgc
caggagccggatgacacaacagcagcccctgcgggcaaggggaccacggctgaaaacact
gagcagtgggatgggaatgccacggggctggtggagaacacggcacagcccagcatcact
cctccccacaccacgttacctgcccctggccaggatgaggccagtagctccacagaggac
ccgcagctcccggggacagggaccacgaaggacccacagctcctggggacagggccccct
gcagcgacggggacatgggtgtccttgcagagaccggcaggtccctggccaggtagtgcc
cctttccctttctcaccaggtgatggtacccacgagcaggcggtgccgccctgggacccc
atggcgcaaatgccccaacaccgccacggagcatcgcctgccccaccaaacctgcggcac
ggcaccggccgccaggggctggtgctggctggcatgaacgggagccagagccctcctttg
cctaacaggagggcagctaacagtgtggatcctcctcttgctgataacgccagccctcgc
gagtttgatttactaactgccgctgcgcgactctacggtagtggcgcggggctcgcatcc
ttcttacccagactgatgccaccagccggccactgcctgcccgtcccaacccgcctaccc
ttctgcagtgtgctggccaccgaccatttcagattaccgaattacctccgccacagcagc
gaggtggaaatttgggcagctttgcatgagtgggaggggctgcttgaatcgcggtgccat
cgctacgtggagtggtttctctgcttgctcctgctccccgggtgtagcgccttggtcccc
ataacccccccgccgtgccagggcttctgcgaggccatcagagaccagtgttggacccac
ttggccggcgggcgcctgcctttgccttgtgatgctctccctgaggaggacgaagggtat
tcttgtatctttattaatgcttctgcagagaacctgaacaccgaggtcagcctcctggag
ctgattggagaccccccgccagaggagatcctcaaaatttatggccctgacaacagccct
ggctatgtctttggccccaatgccaacacaggccaggtggcccggtaccacctgccaagc
cctttctaccgggacttttccctcctgttccacatccagcccaccactccccgggctggc
atgctctttgccatcacggactcctcgcagagcatcatctatgtgggcgtcaagctgtca
gagctgcgggtgggcaagcagcagatcatcttctactacacagagccgggctcgccaagg
tcatatgcagcagccaccttcactgtgcccaccttgctcaaccagtggacacgctttgcc
atcagcgtggaggaggatgaagttgttctctacctggactgtgaggagcacgagcgtgtc
cactttgagcgctccccggatgagatggagctggaagatggctccgggctctttgttgct
caagctggaggagctgacccagataaataccagggggtgattgctgacttgaggctgcaa
ggggacccacgggcagctgagcgccagtgtgaggaagaggaggacgacactgaggaggtc
tctggtgattttggcagcggggcagaaggtggacaccaaccctcggggaaagacagagac
gtcccggggctggtggatgccgttcctgtcacctctccccctgtggcagcgggcggcggg
ccgaagagcagcgggggctccccgcagcaggcggagaggaccagagcggaggagacactg
cgggtctccacaggaggtaccggccccaaaggcgaaaagggggagaagggtgagcgtggc
ctgaaaggggactcggggactagcagcattgtggggacaggcagcgtcaagggtgaaaag
ggggagaaaggagaactaggcattaagggcagtgctggatttggctaccctggctccaag
ggccagaaaggggagccgggcaaccctggaccccctgggaccctcgcacggcacactgat
ggcttgatggtggagcaggtcaccggtcccccggggccaccagggaaggacggagcccct
ggcagggatggcgagcctggcgatcccggcgaggatggcaaacccggtgatatgggaccg
caggggttccctgggacaccaggggaacctggtctgaagggggagaagggtgacccaggt
gtggggccaaggggaccccctggaccacctggtcccccaggactgccaggaccctcctcc
aagcatgacaagctgacgttcattgacatggaaggctctggcttcgctggtgacttggag
agtctgcggggtccacgagggccacctggtcccccagggccacccggtgtgcccggtttg
ccaggggagccgggacggtttgggatgaacctcacagacctaccaggaccaccagggctg
ccgggcagagatgggacccctgggcccccagggccagtgggtcctcagggtcctcctgga
agagacggagcagctgggcaggcagggcccaaaggagagcggggcgacatgggtgacctt
ggtctccctggtgcaccgggacctaagggcagcaagggagaaatgggaccagctggagcc
ccaggagaaatggggttagctggccttcctgggcccattggaccccgagggcagccaggg
ccccctggtcccccgggaccgccaggaccaggctacgaggttggatttggtgacatggag
ggctcggggctgccatttaccgccagctcccctggaccacctggacctgaaggaccacag
ggggtgccgggactgccgggggtgaagggtgaagctggcagccctgggcagcctggcttg
ccaggaccgaagggagatgctggtgtgcctggagtggatggccgccctggactggagggc
ttccccggacctcagggacccaaaggtgacagaggcagccccggtgagaagggtgagcga
ggccaagacggtgtggggctgcctggcccccctggtccacctggtccccctggacaggtc
atcactgtctcgagcgaagataagtctttggtggctttgcctggtccagagggcagacct
ggtcacgctggcttcccgggcccagtgggaccaaaaggagaccgggggtcatctggcccc
cagggctccccggggttgaagggggagaagggggagcccggcgtcatcatcagccctgat
gggaccatggtgacctcgaaggtgaaaggagaaaagggggagccagggctgcagggaccg
atgggaccctcgggtccccagggacgagcagggatgaagggagagattggctttccgggc
agacccggacgtcctggcatgaacgggctgaagggcgagaagggtgaccctgcagatgtc
agtagtgtgctgggcttgcggggtcccccgggacccccaggtcccccaggtccccctggg
ccacctggcaacatagtctacgacagcagcaatgccttcagcgactccagccatccttca
ctgccgggtttccaccagtttccaggacagaagggagagaaaggcgatgctggagcccca
gggcccccaggccacttcccctatgacctgagtcactttggtgccaatctgcggggtgac
aagggggaggcaggtcccaagggcgagaagggcgagccaggcagcatcccgctctatggt
cccagtgtctccgggctaccaggacctccgggcccccagggctatcccgggctgccgggt
cccaagggggacagtatcgttgggcccccggggcctcctggacctcagggnnnnnnnnnn
nnnnnnnnnnnggggcggggtccccctgccccccctggcccccccggtccaccctccttc
ccaggcccccacagacaagctatcagcatccctggcccccctggaccgccgggtcccccc
ggaccaccaggcaccagtgggacatccttggggctgcgcaccctgccaacctaccaggcg
atgctgagcgccgcgcacgagctgcccgagggcggcctcgtcttcctgactgaccggcaa
gagctctacgtccgcctgcgcgggggcttccgccgggtgctgctggaggagcacacactg
atccccagctcggctctggacaacgaggtgtacgacaagccccccaccnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccggccggatccagcccccgtggctgcc
cacgtgcaccaggactttcagcccgctcttcacctggtggccctgaacgccccgctgagc
ggcagcatgcgtggcatccggggcgctgacttccagtgcttccagcaagcccggcaggtc
gggctggccggcactttccgtgccttcctctcctcccgcctgcaggacctctatagcatt
gtgcgcagggctgaccgtgccaccgtgcccatcgtcaacctccgggacgaagtgctcttc
agtaactgggaagcccttttcacgggcagcgaggccccgctgcgagctggtgcccgcatc
ctctcctttgatggccgggacatcctgagggatatgggatggccacagaagagcatctgg
catggctcagatgccaagggccggcgcttgcccgagagctactgtgagacgtggcggaca
gaggagcacactgccaccggccaggcttcctcgctgggctccggcaagctgctggagcag
gtagccagcagctgccagcatgccttcatcgtcctctgcatcgagaacagcttcatgact
gccaccaaaaagtga
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integrated database retrieval system
