Egretta garzetta (little egret): 104122670
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Entry
104122670 CDS
T05152
Symbol
POLR2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
egz
Egretta garzetta (little egret)
Pathway
egz03020
RNA polymerase
egz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
egz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104122670 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
104122670 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egz03021
]
104122670 (POLR2B)
03400 DNA repair and recombination proteins [BR:
egz03400
]
104122670 (POLR2B)
Enzymes [BR:
egz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104122670 (POLR2B)
Transcription machinery [BR:
egz03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
104122670 (POLR2B)
DNA repair and recombination proteins [BR:
egz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
104122670 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
104122670
NCBI-ProteinID:
XP_009633134
LinkDB
All DBs
Position
Unknown
AA seq
1167 aa
AA seq
DB search
MQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDL
QAEAQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVD
ITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFII
NGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGA
KKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDE
AFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGY
MVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGK
DFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNS
PIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEE
WSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDI
REREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDT
LEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSA
MGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTG
YNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAIYDK
LDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQV
MVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII
NPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEV
LYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFG
EMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS
LVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgcagtatgatgaagacgatgatgaaatcacccccgacttgtggcaagaagcctgctgg
attgttattagctcctattttgatgaaaagggtttagtcaggcaacagttggattctttt
gatgagtttattcagatgtctgtgcagagaattgttgaagatgctccaccaattgattta
caagctgaagcccagcatgccacaggagaagtggaagagccgccccggtatctgctgaaa
tttgaacaaatctatctctcgaaacctacacattgggaaagagatggagcaccctcgcct
atgatgcccaatgaagccagactgagaaacctgacgtattcagcccccttgtatgtggat
ataactaaaacagttattaaagaaggggaggatcagttacagacacagcatcaaaaaact
tttataggaaaaattcctattatgttacgttcaacatactgtttgttgaatggcttaact
gaccgtgatctttgtgaactgaatgaatgcccgcttgatcctggtggctactttatcatt
aatggatcagaaaaggttctgattgctcaagagaaaatggctacaaacacagtatatgtg
tttgcaaagaaggattcaaaatatgcctacacaggagagtgtagatcttgcctggaaaat
tcctctcgaccaacaagtactatatgggttagcatgctggccagaggtgggcagggtgcg
aagaagagtgctattggtcagcgcattgtagcaactttgccatatatcaaacaagaagtc
cccatcataattgtctttcgtgcgctaggctttgtgtctgacagggacattttagaacac
atcatatatgattttgaagatccagaaatgatggaaatggtcaaaccttctctggatgaa
gcgtttgtcattcaggagcaaaatgttgctctaaacttcattggatcaagaggtgcaaag
ccgggtgtcaccaaagaaaagagaatcaagtatgctaaagaagtcttgcagaaagaaatg
ctcccacatgttggtgtcagtgacttctgtgaaaccaaaaaggcctattttctagggtat
atggttcatagattgttgctggcagccctgggaagaagagagcttgatgacagagatcat
tatggcaacaaaagactggatcttgctgggccactgttagctttcctgttcagaggaatg
tttaagaacttgctgaaggaagtgagaatatatgcacaaaagtttattgacagagggaag
gatttcaacctggaactggcaattaaaacaagaattatttcagatggtttgaagtattca
ttggcaactggaaactggggtgaccagaagaaagctcatcaggccagagcaggagtatct
caggtgttaaaccgcctgacttttgcatctacactttcccatctgagacgcctgaattct
ccaattggtagagatggtaaactggcaaagcccagacagctgcacaatacactgtgggga
atggtttgccctgcggagactccagagggtcatgcagtaggacttgtgaagaacttagcc
ctgatggcttacatttctgtggggtcccagccatccccaattttggaattcttggaagag
tggagcatggaaaacctggaagaaatctctccagcagcaatagctgatgctaccaagatc
tttgtcaatggctgctgggtaggaatacacaaagatccagagcagctcatgaatacccta
aggaagctccgtcgtcagatggacatcattgtatcagaggtctcgatgattagggatatt
cgtgagcgagaaatccgcatctatactgatgcaggcagaatttgtcgaccccttttaatt
gtggaaaaacagaagttgctgttgaagaaaaggcatattgaccaactgaaggaacgagag
tataacaattacagttggcaggatctcgtggccagtggtgtagtagagtacattgacaca
ctggaagaagagactgtgatgctggcaatgactccagacgatttgcaagagaaaggcgtg
gcgtattgttcaacatacacgcactgtgagattcacccatctatgatcctgggagtatgt
gcgtctattatccctttccctgatcacaaccagtctcccaggaacacctaccagtctgct
atgggtaagcaggctatgggagtttacattacaaactttcatgttcgtatggatacgctg
gcacatgtgttgtattatcctcagaagcccctcgtaacaacacgctccatggagtacttg
cgatttagagagttaccagcaggtatcaactcgattgtagccattgcatcatacacaggc
tataaccaggaagactctgtcatcatgaaccgttctgctgttgacagaggctttttcaga
tctgtgttctatcgctcgtacaaagagcaagagtctaaaaaagggtatgaccaagaggaa
gtttttgaaaagcctacacgtgaaacttgccaaggtatgagacatgcaatctatgacaaa
cttgatgatgatggtttgatagcacctggggtacgtgtgtctggggatgatgtcatcatt
ggcaaaacagtaacgctgccagaaaatgaagacgaactggaaagcactaacagacgtttc
acaaagagagactgtagcacttttctgcgaactagtgagactggtattgtagatcaggtc
atggtaacccttaatcaggaaggatacaagttctgcaagattagggtacgctctgtaaga
atcccacaaattggagataaatttgccagcagacatggtcagaaaggaacctgtggtatc
cagtacaggcaagaggatatgccctttacctgtgaaggcatcacacctgatataattatc
aacccccatgctatcccttcccgcatgaccattggtcacttgattgagtgtcttcagggg
aaggtgtccgcaaacaagggagaaattggtgatgctacaccgtttaatgatgctgtcaat
gtgcagaagatttccaatcttttatcagattatggctatcatctaagaggaaatgaggtc
ctctacaatggcttcactggtcgaaaaatcacatcacagatcttcattggtcctacgtat
taccagcggttgaagcacatggtagatgacaaaatccattctcgtgcaagagggccaatc
cagatacttaacagacagcccatggaaggtagatctcgtgatggtggccttcgtttcgga
gaaatggaacgagactgccagattgctcacggagcagcccagttcttgagagaaagattg
tttgaagcttcagacccatatcaggtccatgtctgtaacctctgtggaatcatggcgatt
gcaaacacaaggactcacacctatgaatgcaggggatgccgtaataaaactcagatatct
ttggttcggatgccctatgcctgcaaactcctcttccaagaactgatgtctatgagtatt
gcacctcgtatgatgagtgtttag
DBGET
integrated database retrieval system
