Egretta garzetta (little egret): 104123286
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Entry
104123286 CDS
T05152
Symbol
SNRNP200
Name
(RefSeq) LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
egz
Egretta garzetta (little egret)
Pathway
egz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104123286 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egz03041
]
104123286 (SNRNP200)
Enzymes [BR:
egz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104123286 (SNRNP200)
Spliceosome [BR:
egz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104123286 (SNRNP200)
Complex C
U5 SnRNP specific factors
104123286 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Hikeshi-like_C
Terminase_6N
Motif
Other DBs
NCBI-GeneID:
104123286
NCBI-ProteinID:
XP_035747019
LinkDB
All DBs
Position
Unknown
AA seq
2131 aa
AA seq
DB search
MSLSEIRSSSSLSNSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKPQ
MQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFIQA
ALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKITDY
GGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDIYGEVRDEASDDDMEGDEAVVRCTLSA
NLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDREC
ENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLYQ
LHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFAQGSHF
MANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLVSVEKLPKYAQAGFEGFKTLN
RIQSKLYRAALESDENLLLCAPTGAGKTNVALMCMLREIGKHINIDGTINVDDFKIIYIA
PMRSLVQEMVGSFGKRLATYGINVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGE
RTYTQLVRLVILDEIHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYEDVA
TFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLN
AETVLGNVQNAKDAVNWLGYTYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAAL
MLDKNNLVKYDKKTGNFQVTELGRIASHYYITNETMQTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFKKLPEEVVKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVEL
TIAPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFXXXXXXXXLVTFFVPVFEPLPPQ
YFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKF
PFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEAL
AEQVFLDWYEKFQERLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNV
QNVNLFIVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLG
CSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIMKHSPKKPVIVFVPS
RKQTRLTAINILTTCASDVQRQRFLHCAEKDLVPYLDKLNDNTLKETLVNGVGYLHEGLT
AMERRVVEQLFSSGAVQVMVASRSLCWGMNIAAHLVIIMDTQYYNGKIHAYVDYPIYDVL
QMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTI
ENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSKCISIE
DEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHED
NLLRQLAQKVPHKLTNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQA
CVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDI
MEMEDEDRNALLQLSDAQIADVARFCNRYPNIELSYEVVEKESIRSGGPVVVLVQLEREE
EVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPATGTHNYT
LYFMSDAYMGCDQEYKFSVDVKEAESDSDSD
NT seq
6396 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcagtgagatcaggtcatcgtcgtcactgtctaactccaacctcgtccttcaa
gccgaccgttcactgattgaccggactcggcgggatgagccgacaggggaagtcctctcc
ttggtgggcaaactggaggggacccgcatgggggacaaggcccagagaaccaaaccccag
atgcaggaggagagacgagcaaagagaaggaagcgtgatgaggacaggcacgacatcaac
aagatgaagggttacaccctgctctccgagggcatcgatgagatggtgggcatcatctac
aaacccaaaaccaaggagacccgtgagacctacgaggtgttgctgagcttcattcaggcg
gctcttggggaccagccgcgtgacatcctctgcggagctgccgacgaggtcctggcggta
ctgaagaacgagaagctgcgtgataaggagaggcggaaggagatcgatctgctgctggga
cagaccgatgatacccgctaccacgtgctggtgaacctggggaagaagatcacggattat
ggcggagacaaggaaatccagaacatggatgacaacattgatgagacgtacggggtgaat
gtgcagttcgagtctgatgaggaggaaggcgatgaggacatttacggcgaagtgcgtgac
gaggcgtccgatgatgacatggagggagatgaagccgttgtccgttgcaccctctcggcc
aaccttgtggcatcgggtgagctgatgagttcaaagaagaaggatctgcatcctcgagac
atcgacgccttttggctccagcggcagctgagccgtttctacgatgatgccattgtttcc
cagaagaaggcggatgaagtgctggagatcttgaagaccgcaagcgatgaccgggaatgt
gagaaccagcttgttctgctcctgggctttaacacctttgacttcattaaagtcttgcgc
cagcaccggatgatgatcctgtactgcactttgctggccagtgcacaaagtgaagctgaa
aaagaaaggataatggggaagatggaagcggatcctgagctgtcgaagttcttgtatcag
ctgcacgagacggagaaggaggatctcatccgggaggaacgttctcgccgggagcgtgtt
cgtcaatcccggatggatactgacttggagaccatggatctagaccaaggaggagaggcg
ctggctccccggcaggtgttggatttggaggatctggtgtttgcccaaggtagtcacttc
atggccaacaagcgatgccagctccccgacggctccttccgcaggcagcgcaagggctac
gaggaggtgcatgtgcctgccctgaagccaaagccttttggctccgaagagcaattggtt
tctgtggaaaagttgcccaaatacgcccaggctggattcgaggggtttaaaacactgaac
cgtattcagagcaaactctaccgcgctgcgctggagtcagatgagaatttgctgctgtgt
gctcccacgggcgctgggaagacgaacgtggcgctcatgtgcatgttgcgagaaataggg
aaacacattaatatcgatggcaccatcaacgtggacgacttcaagattatctacatcgcg
cccatgaggtccttggtgcaggagatggtgggcagctttgggaagcgcctggcgacttac
ggcatcaacgtggctgagctgacgggggatcaccagctgtgcaaggaggaaatcagcgct
acccagatcatcgtctgcaccccggagaagtgggacatcatcacccgcaagggaggagaa
cgcacctatacccagctggtgcggttggtcatcctggatgagatacacctactgcacgat
gaccgaggacctgttctggagtctttggtagccagagccatccgcaacatcgagatgact
caggaggacgtgaggctcgttggcttgagtgccaccctgcccaactacgaggatgtggct
acattcctgagagtggacccagccaaaggcttgttctattttgataacagcttcagaccg
gtgcccctagagcagacctatgtgggtataacagagaagaaagcaatcaaacgcttccag
ataatgaatgagattgtttatgagaagattatggagcatgccggaaagaaccaggtgctg
gtgttcgttcactccaggaaggagaccgggaagacagcccgggccatcagggacatgtgc
ctggagaaagataccctgggcctcttcttgcgggagggctcagcctccaccgaggtcctg
aggaccgaagccgagcagtgcaagaacctggagctgaaggacctgcttccttacggcttc
gccattcaccatgccgggatgactcgagtggaccggacgctggtagaggatctctttgct
gacaagcacattcaggtgctggtctccacagccacgctggcctggggtgtgaacctgcct
gctcacactgtcatcatcaaggggacgcaggtgtacagccccgagaaggggcgctggacc
gagctgggtgctctggacatcctgcagatgctggggcgtgccgggaggcctcagtacgat
accaaaggagaggggatcctcatcacatcccacggcgagctgcagtattacctgtccctg
ctcaaccagcagctccccattgaaagtcagatggtgtcgaagctcccagacatgctgaac
gcagagactgtgctcggcaatgtccagaacgcaaaggatgcagtgaattggctgggctat
acctacctgtacatccgaatgctgcgctcccctactctctacgggatatcccacgatgat
ctgaagggagatccgctgctggaccagcgccgcctggatctggttcacactgcagctctc
atgttggacaagaacaacctggtgaagtacgacaagaagacaggaaacttccaggtgaca
gagctgggccgcatcgccagccactactacatcaccaatgagacgatgcaaacttacaat
cagctcctgaaacccaccctgagtgaaatcgagctgttccgggtcttctcgctgtcctcg
gagttcaggaacatcaccgtgagggaggaggagaagctcgagcttcaaaagttgctggag
cgagttcccatcccggtgaaggagagcatagaggagcccagtgccaagatcaacgtcctc
ctccaggccttcatctcccagctgaagctggaaggatttgctctcatggcagacatggtg
tacgttacccagtctgctgggcggctgatgcgtgccatcttcgagatcgtcctgaaccgt
ggctgggcccagctcaccgacaaaacccttaacctctgcaagatgattgacaaacggatg
tggcagtccatgtgcccattgcgccagttcaagaaactgcctgaggaagtggtgaagaaa
attgagaagaagaatttcccgtttgaacggctctatgacttgaaccacaacgaaatagga
gaactgatccgaatgcccaaaatgggcaagacaatccacaaatacgttcatctgtttcca
aagctggagctctcggtccatttgcagcctattacccgctccaccctgaaagtagagctc
accattgcccccgacttccagtgggacgaaaaggtacatggttcatccgaagctttctgg
attctggtggaagatgtggacagtgaagtgatcctgcaccacgagtacttcncnnnnnnn
nnnnnnnnnnnnnnnctcgtcaccttcttcgtgcctgtgtttgagccgctgcccccgcag
tacttcatccgggtggtctccgaccgctggctctcctgtgagacccagctgcccgtttcc
ttccgccacctgatcctccctgagaagtaccctcctccaaccgagctgctggatctgcag
ccgctgcctgtgtccgctctgcgaaacagcgccttcgagagcctctaccaggacaagttc
cctttcttcaaccctatccagactcaggtgtttaacacggtttataacagcgacgacaac
gtgtttgtgggtgcccccacgggaagcggaaagaccatttgtgctgaatttgccatcctg
aggatgttgctccagaattcggagggacgctgcgtgtacatcacccccatggaggccctg
gcagagcaggtcttcttggactggtacgaaaagttccaggagcgtctcaataagaaggtg
gtcttgctgacgggggagaccagcaccgacctgaagctgctgggcaaagggaacatcatc
atcagcacccctgagaaatgggacatcctctcacgacgctggaagcagcgcaagaatgtc
caaaacgtcaatctcttcatcgtggacgaagtgcatctcatcgggggcgaaaatgggccg
gtgctggaggtcatctgctcccgcatgcgctacatctcctcccaaattgagcgacccatc
cgtatcgtggccctcagctcgtccctgtccaacgccaaggacgtggctcactggctgggc
tgcagtgccacctccaccttcaacttccaccccaacgtccgccccgtgcccctggagctc
cacattcagggtttcaacatcagccacacgcagactcgcctgctctccatggccaagcca
gtctaccatgccatcatgaagcactcgcccaaaaaaccggtcatcgtcttcgtcccatct
cgcaagcagacgcggctcacggccatcaacatcctcaccacgtgcgcttcggatgtccag
aggcaaaggttcctgcactgcgcagagaaggatctggtaccgtacctggacaagctgaac
gacaacactctgaaggagacgctcgtgaacggggtgggctacctgcatgaggggctgacc
gccatggaacggcgagtggtggagcagcttttcagctctggtgcggttcaggtgatggtt
gcctcccgcagcctctgctggggtatgaacatcgccgctcacctggtgatcatcatggac
acacagtactacaacggcaagatccacgcgtacgtggattaccccatctacgacgtgctg
cagatggtgggccacgctaatcgcccactgcaggacgacgagggccgttgtgtcatcatg
tgccagggatccaagaaggatttctttaagaaattcctctacgagcccctgccggtggaa
tcacatttggaccactgcatgcacgatcacttcaacgccgagatcgtcaccaagaccatc
gaaaacaagcaggatgcggtggactacctcacttggacattcctgtatcgcaggatgact
cagaatccaaactactacaacctgcaaggtgtgtcccacagacatctctcggatcacctc
tctgagctggtggaacagaccctcagtgacctggagcagtccaagtgcatcagcatcgag
gacgagatggacgtggctcctctcaacctggggatgatcgccgcctattactacatcaac
tacaccaccatcgagctcttcagcatgtccctcaacgccaagaccaaggtgcgagggctg
attgaaatcatctccaacgctgccgagtatgagaacatccccatcaggcaccacgaggac
aacctgctgcggcagctggctcaaaaagttccccacaagctgaccaaccccaaattcaac
gatccccacgtcaagaccaacctcctgctgcaggctcacttgtcgcgcatgcagctgagc
gccgagctgcagtcggacactgaggaaatcctcagcaaggccatccggctgatccaggcc
tgcgtggacgtgctgtccagcaacggctggctcagccccgcgctggccgccatggagctg
gcacagatggtgacgcaggccatgtggtcgaaggattcctacctcaagcaactgcctcac
ttcacctctgagcacatcaagcgctgcacggacaagggggtcgagagcgtctttgacatc
atggagatggaggatgaggaccggaacgccctgctgcagctctcggacgcccagatcgcc
gacgtcgctcgattctgtaaccgttaccccaacattgagctctcctacgaggtggtggag
aaagagagcatccgcagcgggggccctgtggtggtgctggtgcagctggagcgtgaagag
gaggtcaccgggcctgtcatcgccccccttttcccccagaaacgcgaggagggttggtgg
gtggtgatcggcgactccaaatccaacagcctcatctccatcaagcggttgacgctgcag
cagaaagccaaggtgaagttggatttcgtggccccggctacggggacgcacaactacacg
ctgtatttcatgagcgatgcctacatgggctgcgaccaggaatacaagttcagcgtggac
gtgaaggaggcagaaagcgacagcgactccgactaa
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integrated database retrieval system
