Egretta garzetta (little egret): 104125597
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Entry
104125597 CDS
T05152
Symbol
PDCD11
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
egz
Egretta garzetta (little egret)
Brite
KEGG Orthology (KO) [BR:
egz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
egz03009
]
104125597 (PDCD11)
Ribosome biogenesis [BR:
egz03009
]
Eukaryotic type
90S particles
Other 90S particles
104125597 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_Syf1_CNRKL1_N
OB_RRP5_4th
HAT_PRP39_N
Suf
OB_RRP5
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
TPR_12
ARM_TT21_5th
TPR_16
TPR_CcmH_CycH
ARM_TT21
TPR_Slam
Motif
Other DBs
NCBI-GeneID:
104125597
NCBI-ProteinID:
XP_009636363
LinkDB
All DBs
Position
Unknown
AA seq
1843 aa
AA seq
DB search
MAAIEENFPRGGVQKKPTEGKTPNPKLERDNLFDIHHEEQSRKRKRSQSDQGKQKKFKAD
KIAAAKDSVVNIEPLTIEALCEGMLLLGCIKEVSDYELVISLPNGLSGFVPVTQISDAYS
KMLSKQVAQGELLEDLNSLSDMYSPGTLVRCVVTSVEKSADGRRSIKLSIDPKKVNKGLN
ASALASGMLLSGFVSSVEDHGYLIDIGVSGTHAFLPRQKAQNYIKAVKRGPDLKIGQNLN
CVIVEVKNEGRVVRLSVDRSEVAASLATERQNWTLSNLLPGLVVKARVQKVAPRGIKVSF
LSSFTGIVDFMHMDPEKSMNYSPDQVVKACILSIHPTSKVVRLTLRQAFLKPGGSPNQLS
NDRMGAVVEESTVKAFYKQFGAIFELDDGTLAFARLKHLSKTRKSLKPGAFKTGCKHKCR
IIDYSLMDEMCIVSLKYQIIEARFLQYQDIHTGDVVQGKVFALKSIGMQVKVTDGIKGLV
PSMHLADVILKQPEKKYNIGDEVRCRVLECSPAGKKLILTLKKSLVQSKLPVLSNYEDAK
PGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHEGQVVKVMVLKCE
PQQERLLLSFRLSSKAALEDKKECTPKKKQEVKYQIGEMVDVKVLKKKDNGLEVSVLEDE
GNVVAWIPTVHLSDFVANCKLLWHCLQEGDVLPRVMCLSDKGERIILSRKSAVISAVQEE
QVVRSFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQ
TVIAKVMSIDEEKQRVLLNLKVSECSSGDSAAESFALLNQYFKEMKEIRNLLRRREDSST
DQGLCELVPGKELQLLVQDVEDGSALFSGGGGGGFALTVFFPPATRYHLGDKNIVPGEKT
KVLVLHVDALTSKVYVSLRAELLKQRAKQRLTENSQHSAIVQHIAEEFAIVSLLETGQLA
AIPIASHFNDTFRFDSEKLKVGQTISATLKVVKVNDHGVLLAVQGPARKNVFVRVRNESE
TALEEMPAAVTHSLSLGDTVTGTVKSIKPTHVTVAIDDKLTGSIHASRILDEVPIGSFPT
STLKAGQKVTARVIGGRDVNTHRYLPITHPHFTRSIPELSIRPSEIEGNVTATLNLKEDS
ALKKLGLYSVGQTVTCFVKKYNILKNWLEVEVAPDIRGRVPHLLLSLNTKVLKHPEKSFK
NGQAVSATVTGTDVTETNLCLSLTGIQPMEQGTITVGMVTKVIPHIGLTIALPGGKTGKV
SIFHLNDTYMENPLGDFKVGKIVRCYILSNENGKIQLSLRQSRLNPKSNSKVEDVEITCI
KDVKKGQLVRGYVKSITPSGVFFGLSTSLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLT
AKVLGVNGKEKHIELSLLPEDTGMPNVFPESLGLPRYGAEEEKKEADDQEKREELKLKTK
RRRGNSESEQEAKPKKRKICPADENDSGIEVYYREEEEDDDQEEEAAKKKSKIRKPGEAP
RLQVSVGFTWDEDMNAVDIPVLNQKEESSESEEEDDPQSKMKKQTKKEKELEKQKKEKEL
CKLEAALMDPSRQPQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKT
ICFREEQEKLNVWVALLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYANSEKYK
QAEELYHTMLKRFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFA
QLEFRFGDPEHAKALFESTLSSYPKRTDIWSIYMDIMIKHGSQKEVRGIFERVIHLSLAP
KKMKFFFKRYLDYEKKFGTTESVLAVKRAALEYVETKSSLADT
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atggcagccatagaagaaaactttcctcgagggggcgtccagaaaaaacccacagaggga
aaaacccccaacccaaagttagagcgggacaatttgtttgatattcaccatgaagaacaa
tctaggaaaagaaaaaggagccaaagtgatcaaggaaagcagaaaaagttcaaggcagac
aaaatagctgctgctaaagatagtgttgtgaatattgaaccactcacaattgaggcactc
tgtgaagggatgctgctccttggttgtataaaagaggtcagtgactacgagctagtaatc
agcttgcccaatggactttcaggatttgtgccagtcacgcagatcagcgatgcctacagc
aaaatgctgagcaagcaggtggcccaaggagaactgctggaggacttgaattcgctctcg
gacatgtattctccagggacactggtcaggtgtgttgtgaccagtgttgagaaaagtgct
gacgggcgtcggagtatcaagttatcaatcgaccccaagaaggtcaataagggtctgaat
gcttcagcactagcatcaggcatgctgctctctggctttgtgtctagtgtggaagaccat
ggctacctcattgatattggggtcagtgggactcatgctttcctgcctcgtcagaaagcc
caaaattacatcaaagcagtcaagagagggcccgacttgaaaataggccagaacctgaac
tgtgtcattgtggaagtaaagaacgagggaagagtggtccgtttgtctgttgatcgatcg
gaggttgctgcatcccttgcaacagagcgacagaactggaccctctctaatttactacca
ggattggtggtgaaagctcgagtgcagaaggtggccccacgggggatcaaagtgagcttt
ctgtcttccttcactggcattgtggatttcatgcacatggacccagagaaatccatgaac
tattctccagatcaagtggtgaaagcttgcatcctctctatccaccccacctccaaagtg
gtgcggcttactctacggcaggccttcctcaagcccgggggatccccaaaccagctctcc
aatgatcgcatgggggcagtggtggaagagtcaacagtgaaagctttctacaagcagttt
ggtgccatctttgagcttgatgatggcactcttgcatttgcacggttgaaacatctttca
aaaaccagaaaatcccttaaacctggggcatttaaaacaggatgcaaacacaaatgtcgg
atcattgactacagccttatggatgagatgtgtattgtatctctgaagtatcagattatt
gaagcacggtttctgcaataccaagatatccacacaggagatgtggtgcagggcaaagtg
ttcgcattgaaatccattggaatgcaggtgaaagtgactgatgggattaaagggcttgtg
ccatccatgcatctcgctgatgtgatcctgaagcagcctgagaagaagtacaacatagga
gatgaagtcaggtgtcgggtgctagagtgcagtcctgcaggaaagaagctgatccttact
ctaaagaaaagtcttgtccaatcaaagcttccagtcctctccaattatgaagatgcaaaa
ccaggcctgatcacacatggctttgtggtgtgtgcaagggagtttggctgcattgtgaag
ttctacaacgatgtcaaaggtctggtacccaagaatgagctgagctcagaacccatatct
tgtccagataaagtcttccatgaaggccaggttgttaaagtaatggtcttaaaatgtgag
ccccagcaggaaaggcttttattgtccttcaggctatccagcaaggctgccctggaggac
aaaaaggagtgtactccaaagaagaaacaggaagtgaaatatcaaataggagagatggtt
gatgtgaaagtcttgaagaagaaagataatgggctagaggtttctgtcttagaagatgaa
ggcaatgtggtagcctggattcccacggtgcacctctctgactttgttgctaactgcaag
ctcctgtggcattgtcttcaagagggagatgtcctgcccagagttatgtgcctaagtgac
aagggggagcgtatcatcttgagcagaaagtctgcagtgatttctgctgtacaggaggag
caagttgtgagaagtttctctgaaatccagcctgggatgctattgactggttatgtgagg
aatgtgatgccttttggagtgtttgtggagttcccttttggtgtgacaggactggcgccc
aaagtgagcatgagtgacaagtttgtgacagacaccaaggaccactttgtggtgggacag
actgtgattgcgaaggtgatgagcattgatgaggagaagcagcgtgtgctcctcaatctg
aaggtgtcagagtgcagctcgggtgattctgctgcagagagctttgccctgctgaatcag
tatttcaaggagatgaaagaaatcaggaacttgttgagaagaagagaggattccagcacg
gaccaaggcctttgtgagttggtgcctgggaaggagctgcagctgcttgtgcaggatgtg
gaggatggctcagcactgttcagtggcgggggggggggggggtttgcgttaacagttttt
tttcccccagccactcgctaccatttgggagacaaaaatattgttcctggtgagaaaaca
aaggtgttggttcttcatgtggatgccctcacatccaaggtgtatgtttctcttcgtgca
gaactgttaaagcaaagagccaagcaacggctcacagagaactcccagcactctgccatc
gtgcagcacatagcagaagagtttgccatcgtgtctttgttggaaacaggccagttggca
gctatccccatagcctctcacttcaatgacaccttccgctttgactcagaaaaactgaag
gtgggacaaacaatctctgcaaccttaaaagtagtgaaggtgaatgaccacggagtcttg
ttagcagtacaaggcccagcaaggaagaatgtttttgtaagggtccggaacgagtctgag
acagcgttagaagagatgcctgctgctgtaacacactcgctttccctgggggacactgtt
actggtactgttaaatccatcaaaccaacccatgtcacagttgctattgatgacaagctg
acaggttcaatccatgcatcccggattctggatgaagtgcccataggctcttttccaaca
tctactctgaaagctggacagaaggtgactgcccgagtcattggaggcagagatgtgaat
actcacaggtacctgcctattacccatccacacttcacacggtccattccagagctcagc
attcgaccaagcgaaatagaagggaatgtcacagcaacgctgaaccttaaagaagacagt
gccctcaagaaacttgggctctacagtgttggacagacagttacatgttttgtgaaaaag
tataacatcctcaaaaattggctggaggtagaagttgcccctgacattcgaggaagagtt
cctcatctgctgctgtctctgaacaccaaggtcttaaaacatccagaaaagagcttcaaa
aatggccaggcagtgtcagctacagtgactggaacagatgtcaccgaaacaaacctctgc
ttgtcactcacaggaattcagccgatggagcagggcaccatcactgtaggcatggtaaca
aaggtgattccacacattggtttgaccattgcactgccaggtgggaagactggcaaagtc
agcatctttcacctgaatgatacttacatggagaatcctctgggtgacttcaaagttggc
aagattgtcaggtgttacatcctctccaatgagaatggcaaaatccagttatctctccgg
caatcccggctaaacccaaagagcaacagcaaagtggaggatgttgaaatcacatgtatt
aaggatgttaaaaaaggccagctagtgagaggctatgtcaaatcaatcactccatcaggt
gtattctttggcttgtccacttctcttctgggccgaatcctgttccagaatgtttcccct
tactttgtacagaaacactccttatatgaaaagtacctgcctgaaggaaagctgcttact
gccaaggtgcttggtgtaaatggaaaagaaaaacatattgaactctctctcctgcccgag
gacactgggatgccaaacgtttttcccgaatccctaggcctaccacgatatggtgcagag
gaagagaaaaaagaggcagatgatcaggaaaagagagaagagcttaagctgaagacgaaa
cggagaagaggaaactctgaaagtgagcaggaggctaagccaaaaaagaggaagatctgc
ccagcagatgaaaatgatagtggaattgaggtatattaccgggaggaggaggaggatgat
gaccaggaggaagaagcagctaaaaagaaatccaagataaggaaacctggtgaagctccc
aggctgcaggtttccgtgggcttcacctgggatgaggacatgaatgcggtggatatacct
gtgctgaatcagaaggaagaaagctcagagagcgaggaggaggatgatccgcagtcaaag
atgaagaaacaaacaaagaaggagaaggagctagagaagcagaagaaggagaaggagctc
tgcaaattagaggcagccctgatggaccccagtcggcagccccagtcagcagatgacttt
gaccgcctggtgctgagcagtcccaacagctccatcctctggctacagtacatggctttc
cacctccaggctactgagattgagaaggccagagctgtggcagagagagcgctgaaaaca
atctgcttcagggaagaacaggagaagctgaatgtctgggtagctctgctgaacttggag
aacatgtatggtactgaggagacactgatgaaggtctttgagagagctgttcaatacaat
gaacctttgaaagtcttccagcatctgtgtgacatctatgccaattctgagaaatacaag
caagcagaagaactgtaccacacaatgctgaagcgtttccgtcaggagaaatctgtgtgg
ctgaaatatgcatcttttctcctgaagcaaggccagactgaggctacacataggctgttg
gagcgtgctctcaaggctttgcccaccaaagaacatgtggatgtaatttcaaggtttgca
cagctggagttccgttttggggacccagaacatgccaaggccctctttgagagcaccctc
agcagctatcccaagcggacagacatctggtccatctacatggacatcatgatcaaacat
ggcagccagaaggaagtacggggcatctttgagagggtcatacacctgagcttggcacca
aagaagatgaaattcttctttaaacgctacctggattatgagaagaaatttggtacaaca
gaaagtgtcctggctgttaaaagagcagcacttgagtatgtggagaccaagagttctctt
gctgacacctaa
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integrated database retrieval system
