Egretta garzetta (little egret): 104127029
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Entry
104127029 CDS
T05152
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
egz
Egretta garzetta (little egret)
Pathway
egz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104127029 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egz03041
]
104127029 (DDX42)
Enzymes [BR:
egz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104127029 (DDX42)
Spliceosome [BR:
egz03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104127029 (DDX42)
Complex B
104127029 (DDX42)
Complex C
U2 SnRNP specific factors
104127029 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
104127029
NCBI-ProteinID:
XP_035751060
LinkDB
All DBs
Position
Unknown
AA seq
952 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTLQQVVELHHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISDFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPDSLIAAAAAAKGVPGFTSTGNLSSVPT
FPSVGAQGFNNSNASTSNRESSGGSSSTTSIAAAGGSSVGSGSGGGGGVGGIVRERYNDN
RNSRHNEILRRGEGGGRYNDVQRHGEGGSRHSDTYRHGEDRHSDNHRHSESRHFADVGSS
NRNNGDSRNSNEGRNNENRNGENRKDANSRENKTDGFAVPEPPKRKKSRWDS
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaacaaaggcggacctggtactaagagaggctttggttttggtggatttgcc
ataacacctggaaagaaagaggagcctaagctctctcaacaatctcatagtgcttttgga
acagctggttcttctgctgcatttgcgaaatcaggacctcctcagctgccttctttctac
aaaattgggtcaaagcgagcaaattttgatgaagagaatgcgtactttgaggatgaagag
gaagattccagcaatgttgaattgccatacattcctgcagagaattcccccactcgccag
cagtttcattccaaatcagcagactctgacagcgatgatgatcctctggaagcattcatg
gctgaagtggaggatcaagcagctcgagacatgaagagacttgaagataaagacaaagaa
aaaaagaacgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggctgaaaaccccactgctggtgtggtccaagaagaggaagaggataac
ctggagtatgatagtgatgggaatccaattgcaccatccaaaaaaatcattgatcctctt
ccacctattgaccattcagagattgaatatccaccatttgagaaaaatttctatgacgag
catgaggagatcaccagtctcaccctgcagcaagtggtggagttacatcataagctaaat
ctccgggtctctggtgctgctcctccaaggcctggcagtagttttgctcattttggattt
gatgagcaacttatgcatcaaattaggaaatctgagtatacccagcccactcctatacaa
tgtcagggtgttccagttgcgctaagtggcagagatatgattgggatagccaagactgga
agtggaaaaacagcagccttcatctggccgatgttgattcacatcatggatcaaaaggag
cttgaaccaggggatggtcccattgcagtgattgtatgcccaaccagagagctttgccaa
cagatccattctgaatgtaagcgctttggtaaggcatataatctgcgctctgtagctgtg
tatggaggaggaagcatgtgggagcaagccaaagccctccaggaaggggcagagatagtt
gtctgcacacccggtcgtttaattgatcacgtgaaaaagaaagctacaaacctgcaaaga
gtcacttaccttgtgtttgatgaagccgacagaatgtttgatatgggttttgaatatcag
gtccgatcaattgcaagccacgtacgtcctgacagacagacccttttgttcagtgccact
ttccgtaagaagattgagaaattggctcgagatattctgatcgacccaattcgagttgtg
cagggagacattggagaggcaaatgaagatgttacccaaattgtggagattttcccctct
ggacctagcaaatggaactggctgactcgacgcctcgtagaattcacatcatctgggagc
gttctcctgtttgtcaccaagaaggcaaatgcagaagagctggccaataaccttaagcag
gaggatcataatctggggctgcttcacggtgacatggaccagagtgagaggaataaagtc
atttcagattttaagaaaaaggggatcccaatactggtagctactgatgtggcagctcgt
gggttagatattccttccattaagactgtgatcaattatgatgtggctcgggacatagat
acgcacacccatagaattggtcgtactggcagagcaggcgagaagggagttgcctacact
ctgctgactcccaaagacagtaactttgctggtgatcttgtcagaaatctggaaggcgct
aatcaacatgtttccaaagagctgttggatctagcaatgcagaatccgtggttccggaaa
tcacgtttcaaaggaggaaaaggcaagaaactgaatattggtggcggtggcttaggatac
cgtgaacgtcctggtctgggatcagaaaattctgaccgtggaaacaacaacagtgtgatg
agtaactatgaggcatacaagccatccactggggcaatgggagacagactaacggcaatg
aaagcggcttttcagtcccagtataagagccactttgttgctgcaagcttaaataatcaa
aagactggtagctccgctgctggtgctagtggctggaccagcgctgggagcttgaactca
gtaccgacaagttcagcacagcaaaatgctgcaaatcctgacagcctaattgcagctgct
gcagcagcaaagggtgttccgggtttcaccagcacagggaatttgagtagcgttcccacc
ttcccaagtgtcggagcacagggcttcaacaactcaaatgccagcaccagcaatcgagaa
agcagcggcggcagcagcagcaccaccagcattgctgctgctggcggcagcagtgttggc
agtggcagcggtggtggtggtggtgttggcggcattgttagagaacgatacaacgacaac
cggaacagtcgccacaatgagatcctgcgccgtggagagggtggtggtcgctacaatgat
gtgcaacgccatggagaaggaggcagtcgccacagtgacacttaccgccacggagaggac
cgacacagtgacaaccatcgccacagtgaaagccggcactttgctgatgtgggcagtagc
aatcgcaataatggtgatagcaggaatagcaacgaaggcaggaacaacgagaacaggaat
ggtgagaataggaaggatgccaacagccgagaaaacaagacagatggttttgctgtccca
gagcccccaaaacgtaagaagagccggtgggacagttaa
DBGET
integrated database retrieval system
