Egretta garzetta (little egret): 104129415
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Entry
104129415 CDS
T05152
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
egz
Egretta garzetta (little egret)
Pathway
egz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104129415 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egz03021
]
104129415 (PCF11)
03019 Messenger RNA biogenesis [BR:
egz03019
]
104129415 (PCF11)
Transcription machinery [BR:
egz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104129415 (PCF11)
Messenger RNA biogenesis [BR:
egz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104129415 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
CID
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
104129415
NCBI-ProteinID:
XP_009640642
LinkDB
All DBs
Position
Unknown
AA seq
1637 aa
AA seq
DB search
MYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDDIFPLKKLYA
LDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVTSGASTPPAVPEI
QKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQGSSTIASVPAPS
KQHMSPTPHMTVKPPHQTAVQSEKTKPSPSPPLHDIKIVNRDPRLNRMAQHSSHTKDQSH
RKEFPPNTTSQSDAKANKTTQAEKQNSTKQEKLKASEKTQKKELDQSEAKSKSPSPLKNK
LPNTKDTKTQECESTKVSEISKRDPRLKRHLQDKLEGKEEEVKEKRRSTEKKEKEEHKTC
EHRPVGSRNKVINGAVQKQDTATEESEKQGGKQGRSSNRKRSRSRSPKARSPSTHSPKRR
ERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSNKRNAKQEVRDPR
RVKKAQEDRPQETASQHSTKASPDPKENAENWQGSKSGKRWKSGWEENKNSQQSEEHQAL
GKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKRELLKKANERLTS
GEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLSDAELTYYEHKAK
LKRTQVQHSLSRLDLLDPDDILDYHLPDALLSGIECEQAKAKRGVQFDRKEPFGERSRRH
SPVSGTNRPFADNLSPLESRRRLEEPNATKGARGSKNFDPYDSWGESDEFRDALRQQGKS
TTEFQKIDGDAICRFDNREERQLLGQAGVREEPRSPFSERFKRTRYEDPEKAPFPESPGS
RFGGIEAKQRISALMEDRPLFDGSPRQAAARVGVDGQGSPFVDGPAAGSSSRIDGPPGQA
AMRFEGPLVGAGASQFDGPLAGAGGAGALRFDGPPGQLGGALRFEGPPGQVGGGGPLRFE
GPLGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFEGPHGQPMGPRGQ
PGGGLRFEGPHGQPLGPHGQPGGSLRFEGPHLQPLGPHGQPGGGLRFEGPHGQPMGPHGP
SGGGLRFEGPHGPSGGGLRLEGPHGQPGVGPRLIDGPVHQGAGGLRFDGPLGRAGPRFDG
CHAAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQQAQPRFDTAIPQRFDGPHQPASRF
DLPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPSHGMQFQRPDIFDGSP
GPNFNGPSGPGAQNFPLRAAGHYFDEKSLQGPQYGNFGNMPMGSNQVSLMSAQPGPYGQG
QQYLPNPGSFVQNPAGALPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTSAQVNET
SAQPAAEEEDDDQNEDQNVPDLTNFTVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTD
VYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEV
VLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHP
SCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKQETQESCDSPKVKEEPDDTPTACAE
ESTPASTEIKTEPDESV
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atgtatcttatggattccattgtcaagaatgtgggaagagaatatcttactgcatttact
aaaaacctagttgcaacatttatttgtgtatttgaaaaggtggatgaaaatactaggaaa
agtttatttaaattacgctccacatgggatgatatttttcctttgaagaaactatatgca
cttgatgtcagagtcaactcattagatcctgcttggccaattaaacctctgcccccaaat
gtgaatacttctagcatccatgtgaaccctaagtttttaaataaatcgccagaggaatct
actgcacctacctctgctgtcacttctggtgcctctactcctccagctgttcctgaaata
caaaagaatttgacacaggagcaactgataaggcagcaattgcttgcaaagcaaaagcag
ttgttagaacttcagcaaaaaaaattagagctggagctggaacagactaaagcacagttg
gctgtatctcttagcgtccagcaaggttcatctactatagcttcagttccagcaccttcc
aagcaacacatgtctcctacacctcatatgacagttaaaccacctcatcagactgctgtg
caatccgaaaaaaccaaaccatccccaagtcctccccttcatgatatcaaaatagtgaat
agggatcctcgacttaataggatggctcaacattcttctcatactaaagatcaatctcat
aggaaagaatttccaccaaacacgaccagtcagtctgatgccaaggcaaacaaaacaaca
caggctgaaaaacaaaactcaacaaagcaagaaaaattaaaagcaagtgaaaaaacacag
aagaaagaacttgaccagtcagaagcaaaatctaagtcaccatcccctttaaaaaataag
ctacccaatactaaagatactaaaacccaggaatgtgaaagcacaaaagtatctgaaatt
agtaagcgagatccaagactgaaaagacatcttcaagataagttggagggcaaagaggag
gaggtgaaagaaaagaggagaagtacagagaaaaaagagaaagaggaacataagacatgt
gaacatagaccagtagggagcagaaataaagtaattaatggtgctgttcagaaacaagac
acggctacagaggagtcagaaaagcagggtggaaaacaagggagatcaagtaataggaaa
cggtcacgatcacgctctcctaaggcacggtcaccatctacacattctccaaaaagacga
gagaggagatcacccaaaagacgacttaggagtttatctcccacttcatcaactcctaaa
attggaaagatacgtcagataggtcctaagcagtctcatgttgaagaaggaacacaagca
gcaagagatgaaagaaattctaataagagaaatgctaaacaggaggtgcgagatccgagg
agagtgaaaaaagcccaagaagacaggcctcaagaaacagcaagccagcattctacaaaa
gcttctcctgatccaaaggagaatgcagaaaactggcaaggatccaaatcaggcaagagg
tggaaatctggttgggaagaaaataaaaactcacagcagagtgaagaacaccaagcactt
ggtaaatcccctcaccaaagacaccgggaaaactggcctgctggtaaaggaattttatca
ccccgagcaccaaagcagcagcaccggttaagtgtggatgctaatttacagattcccaaa
gaactgacatctgcaagcaagagagaattacttaagaaggccaatgaacgcttaacatct
ggtgaaataacacaagatgagttcctcatggtagctcatcagatccgccagctgttccag
tatcaggaaggaaaacacagatgtaatgtctgggatagccctacagaggaaaaatgtggt
ttgaaaaagaaacctcttctgtccgatgcagaattaacatactacgagcataaggctaaa
ctaaaaagaacacaagttcagcattcattgtcaaggcttgatctgttggatcctgatgat
attttggattatcatttgcctgatgcattgctttctggaatagaatgtgagcaagcaaaa
gccaagcgtggagtacagtttgacagaaaagaaccatttggagaaagatcaaggagacac
tctcctgttagcggcactaatagaccttttgccgacaacctctcaccacttgagagtcga
cgaagactggaggaaccaaatgctactaaaggagcaagaggttctaagaactttgatcct
tacgacagctggggagaatcagatgaatttagagatgctctcagacaacaggggaaaagc
acaacagagttccagaaaatagatggtgatgcaatctgcagatttgataatcgtgaagaa
agacagcttcttgggcaagctggtgttcgagaggaaccaagatcaccattcagtgaacgt
ttcaaaagaactaggtatgaagatccagagaaagcaccgtttccggaaagtccaggatca
agatttggaggcattgaagcaaagcagaggataagcgcactaatggaagacagacctcta
tttgatggctcacctagacaggctgctgcaagggttggggtagatggacaaggaagtcct
tttgttgatggtcctgctgctggttcaagttccagaattgatgggccacctggacaggct
gctatgagatttgaggggcctttggtgggggcaggtgcatctcagtttgatggaccactg
gcaggagcagggggagctggagccctaagatttgatgggccaccagggcagctgggaggg
gccttgaggtttgaaggaccccctggacaggttggtggaggaggtccactgaggtttgag
ggacctcttgggcagataggtgggcctttgcggtttgaggggcctgcagggcagcctgta
ggtggccctagatttgaaggacctggggttggtctcaggtttgagggtccccgtggtcag
ccttcaggtggtctcaggtttgagggacctcatggtcaacctatggggcctcgaggtcaa
ccagggggtggtctcaggtttgagggaccccatggtcagcccttggggcctcatggtcaa
ccagggggtagcctcaggtttgaggggccacatttacagccattggggccccatggtcaa
cctggaggtggcctcagatttgaggggccacatggtcagcctatggggccacatggacca
tcaggtggtgggctcagatttgaggggccacatggaccatcaggtggtgggctcagattg
gaaggcccacatggtcagccaggtgtagggcctaggttgattgatgggccagtacaccag
ggagctggtggactcagatttgatggtcctctgggtcgggccgggccgagatttgatggt
tgtcatgcagctggatttgatgggcagcctggacagctgtctctcctgcaaagatttgat
ggaattcatggacagcctggtccaagatttgaaagggcgcctggccaacaggcacaacca
cgatttgatacagccatacctcagagatttgatggacctcaccagccagcctctagattt
gacttgccccttggccttcaaggtgcacgttttgaaaatgtagctaaccatcctgcctca
agactagaaatgtcaccatatggacaaggtggtccgtttgtcgaacatcctggccagggc
tacaatggaccatctcatgggatgcagttccagaggcctgatatatttgatggttcgcct
ggaccaaatttcaatgggccatctggcccaggagcacagaatttcccattgagagcagct
ggacactacttcgatgaaaaaagtcttcagggtcctcaatatgggaacttcggtaacatg
ccaatgggaagtaatcaggtttctctcatgtctgctcaaccagggccttatggccaaggt
caacagtatttgccaaatcctggaagttttgttcagaaccctgcaggagcccttccacat
tcataccctgataaccaccttggacagcttgatgtcaatgaattgttcgctaaactgctg
tcaacagggatcctcaaactgtcaaaaactgattccacttcagcacaagtgaatgaaaca
tcagcccagccagctgctgaagaggaagatgatgaccagaatgaagatcaaaatgttcca
gacctcacaaacttcacagttgaagagcttagacagcgttatgatagtgttataaatcga
ctgtacactggaattcagtgttactcgtgtggaatgagattcactacttcacagacagat
gtttatgcagatcatttagattggcattatcgtcagaaccggacagaaaaagacgttagc
agaaaaattacacacagaagatggtactacagtttaacagactggattgaatttgaagaa
atagctgatctagaggagcgtgcaaaaagccagtttttcgaaaaagctcatgaagaggtg
gtgttgaagacacaagaagcggcaaaagagaaggagtttcagagtgtccctgctggacca
gctggagcagttgagagctgtgaaatttgccaagagcaatttgaacagtattgggatgag
gaagaggaagagtggcatctgaagaatgctatcagagtagatgaaaagatttaccatcca
tcttgctacgaagattaccaaaacacatcatcatttgattgcacaccatctcccagcaag
actcctgtagaaaacccactaaatataatgttgaacattgttaaacaagaaacacaagag
tcctgtgactcgcctaaagtcaaggaagaacctgatgacacccctactgcctgtgcagaa
gagagcacacctgcatctacagagatcaaaacagaacctgacgagtctgtttaa
DBGET
integrated database retrieval system
