Egretta garzetta (little egret): 104129801
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Entry
104129801 CDS
T05152
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
egz
Egretta garzetta (little egret)
Pathway
egz03013
Nucleocytoplasmic transport
egz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104129801 (UPF1)
03015 mRNA surveillance pathway
104129801 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egz03019
]
104129801 (UPF1)
Enzymes [BR:
egz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104129801 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104129801 (UPF1)
Messenger RNA biogenesis [BR:
egz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104129801 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104129801 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104129801
NCBI-ProteinID:
XP_035754059
LinkDB
All DBs
Position
Unknown
AA seq
1053 aa
AA seq
DB search
LYNLSTELVFQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLR
YKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQS
ALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQR
PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLC
AKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERE
LLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQ
LGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGV
TAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA
KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRAN
EHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNN
LRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQ
IGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRF
GIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGD
EFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
ttgtataacttaagcactgagcttgtatttcaggttaatggacctgatggcattctgcag
aatggagctgtggatgataacgtggctaaaaccagccagcttctggcagaactgaatttc
gaagaagatgaagaagatacctattacacaaaggatcttcctgtgcatgcttgcagttac
tgtggtatccatgaccctgcctgtgtggtttactgtaacaccagcaaaaagtggttctgt
aatggacgtggaaatacatctggcagccacattgttaatcatcttgtgagagccaagtgc
aaagaggtgactctccataaagatggacctctaggagagactgtcttggaatgttataac
tgtggatgtcgtaatgtgtttctccttggctttattccagctaaggcagactctgtggtt
gttttgctgtgcaggcagccatgtgccagtcagagcagtttaaaggatattaactgggac
agttcacagtggcagcctcttatccaagatcgctgtttcctttcatggctggtaaagatt
ccatctgaacaggaacagttgagagcacgtcagattacagctcaacagatcaacaaactg
gaagaactttggaaggaaaatccatctgcaacccttgaggacttagaaaagcctggtgtt
gatgaagaaccgcagcatgtcctgcttagatatgaagatgcttatcagtaccaaaatata
tttgggcctctagtcaagcttgaggcagactatgacaagaaactcaaggagtctcagacc
caagataacatcacggtcagatgggacctgggcttgaacaagaaaagaattgcttatttc
actttgccaaagactgattcagatatgcgtcttatgcaaggagatgagatctgcttgagg
tataagggagacctggctcctttatggaaaggaattggtcatgttatcaaagttcctgat
aattatggtgatgagatagccatcgagctgaggagcagcgttggagcgcctgtggaagtt
actcataacttccaagtggattttgtatggaagtctacttcatttgacagaatgcagagt
gctttaaaaacatttgctgtggatgagacttcagtgtctgggtacatctatcacaaactg
ttaggtcacgaggtagaagatgtaattattaaatgccaattgccaaagcgctttacagca
caaggacttcctgatctcaaccattctcaggtttatgctgtgaagactgtcctgcagcgt
cctctgagccttattcagggtccccctggtaccggaaaaacagtgacatcagccacaatc
gtctatcatctggctagacagggcaatgggcctgtgttagtctgtgctccgagtaatata
gctgtagatcagctgactgaaaagatccatcaaactggactgaaagtggttcgtctgtgt
gctaagagtcgtgaggcaattgactctcctgtgtccttcctggcattgcataaccagatc
agaaacatggatagcatgccagagcttcaaaaactgcagcagcttaaagatgaaactgga
gaactgtcatctgccgatgagaaacgttaccgtgcgctgaaacgaacagcagagcgtgaa
ttacttatgaatgcagatgtgatctgttgcacgtgtgtgggagctggtgatccaaggctt
gcaaaaatgcagttccgctccattctgatcgatgaaagcacacaggctaccgagccagag
tgcatggtgccagttgtcctgggagcaaagcagcttattcttgtgggtgaccactgccag
cttggtcctgttgtgatgtgtaaaaaagctgccaaggctggcctgtctcagtctctcttc
gagaggcttgtggtgctggggattcggccgattcgcctgcaagtgcagtatcgcatgcat
cctgcactcagcgcttttccatccaatatcttctatgagggttcactccagaatggtgtt
actgcagcagaccgtgtgaaaaaaggttttgatttccagtggccacagccagataagcca
atgtttttctatgttacacaaggacaggaagaaattgccagctcaggcacctcttacttg
aacaggacggaagctgccaatgtggagaagataactacaaagctattgaaagctggtgcc
aaaccagatcagattggcattattactccttatgaaggtcaacgatcctatctggtgcag
tacatgcaattcagtggttccttgcatacaaagctctaccaggaagtggaaattgcaagt
gtggatgccttccagggacgagagaaggactttattatcctctcttgtgtgagggccaat
gaacaccaaggaatagggtttctgaatgaccccaggcgtcttaacgtagctcttacaaga
gcaaggtatggagtgattattgttgggaacccaaaagcgctgtccaaacaaccactttgg
aatcacctgttgaattactacaaggagcagaaggttctggtggagggaccactgaataac
ctccgggaaagcctcatgcagttcagcaagccccggaaactggtcaataccatcaaccca
ggtgcccgtttcatgactactgccatgtatgatgcacgtgaggctattattccaggatct
gtctatgaccggagcagtcaagggcgcccatccaacatgtacttccaaacccatgaccag
atcgggatgataagtgctggccccagccatgtcactgctatgaacattcctatccccttc
aacctcgtgatgccaccgatgccaccaccgggatactttggccaggctaacggaccagcc
gcaggacgtggggcgccaaaaggaaagactggtcgtggtgggcgccagaaaaatcgtttt
gggattcctggaactagtcagtcaaaccttccaaatagtcaagcgagccaagatgtggtg
tcccagcctttctcccagggtccactgactcaggggtatatctccatgagtcagccatcg
cagatgagtcagcctgggctctcccaaccagaattatcacaggacagttaccttggtgat
gagtttaaatctcagattgacgtggcgctgtcacaggactctacttaccagggtgaacgt
gcatatcaacatggcggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
