Egretta garzetta (little egret): 104131912
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Entry
104131912 CDS
T05152
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
egz
Egretta garzetta (little egret)
Pathway
egz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
egz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
104131912 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
egz03400
]
104131912 (LIG3)
Enzymes [BR:
egz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104131912 (LIG3)
DNA repair and recombination proteins [BR:
egz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
104131912 (LIG3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
FMP23
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
104131912
NCBI-ProteinID:
XP_009643422
LinkDB
All DBs
Position
Unknown
AA seq
993 aa
AA seq
DB search
MPAGSRTLSQAARALGRGTGLFSPHTQISLPRPYLCCVGLPGASPSYWYQLLLRSVSFQS
AGRSQGGAGAFHFSLLLHVWLRPACTAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMV
RIGKIVPNPFTESGGDMKEWYHVKCMFEKLEKARATTKKIEDITDLEGWEELQDGEKELI
NKHISEANSKAASTPKKKVIVQAKLTATGQITTKDPLALIAPSPKKFSGFTAKPKNLEDV
SANASHKATLSAKKCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLKKGSGGDGF
HGDVYLTIKLLLPGVIKIVYNLNDKQIVKLFSRIFNCSQEEMVRDLEQGDVSETIRLFFE
QSKCCPPAAKSLLTIQEVDEFLIQLSKLTKEDDQQSVLQHITRRCTGNDLKCIIRLIKHD
LKMNAGAKHVLDALDPNAYEAFKASRNLQDVVERVLKNQQEAEKVPGLKRTLSVQASLMT
PVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVA
HFKDFIPQAFPGGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIY
FNDISLMDRPLCERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVL
KDTKGNYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPK
SEKWCTVTKCSGGHDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKKA
PVWEITGAEFSKAEAHTADGISIRFPRCTRIRDDKDWKTATNLQQLKELYQLSKEKADFN
VVAGEEDESTAGSSGENEGNSRSSTPHSTIKTPPSKSPAKAQKPEESKAVIGSPKKSEEK
RGEKRKASEMDDNGKKTLLDIFTGVKLYLSPSVKDFDKIRRYFIAYDGDLVPEFDTASAT
HVIGDIDDNPGAKRVSPNWIWQCIRKRRLVAPC
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcaggcagcaggacactatcacaggctgcccgggcgcttggcaggggcacagga
cttttctccccccatacacagatctccctgccaagaccctacctttgctgtgttggcctc
cccggggccagtcccagttactggtaccagctgctgttaaggagtgtatctttccagtcc
gcaggcagaagccagggtggtgctggggctttccatttctccctgcttttgcacgtttgg
cttcgcccagcctgcacagctgcagaagacatggcagagcagaggtactgcgtggactat
gccaagcgtggcacggcaggctgcaagaagtgcaaggagaagattgtgaaaggaatggtg
cgcatcggaaagattgttcccaatcctttcacggagtctggtggggacatgaaggagtgg
taccatgtcaagtgcatgtttgagaagctagagaaggcccgggccaccaccaagaaaatc
gaagacatcacagacttggaagggtgggaagagctacaagatggggagaaagaattaatc
aacaagcacatctcagaagctaattccaaggctgcaagtacgccgaagaaaaaagtgata
gtccaagctaagctcactgccacaggtcaaataaccacaaaagatccattggctctcatt
gctccatcaccgaagaagttctctggcttcacagccaagccaaagaatttggaagatgtc
tctgcaaatgcttcccacaaggctaccctatctgcaaaaaaatgtgatccgaagcacaaa
gactgcttgctgcgagagttcaggaagctctgcgccatggttgctgaaaagcctagctat
aatgtgaaaacacagatcatccaggatttcctgaagaagggatctggaggagatggtttt
catggtgacgtatacctgaccattaagctgctgttaccaggtgtcattaaaattgtttac
aacttgaatgataagcagattgtaaagctgtttagtaggatttttaactgcagccaagaa
gaaatggtccgggacctggaacagggagatgtttccgagacgatacgcctcttctttgaa
cagagcaagtgttgtcctccagcagctaaaagtctcctgaccatccaagaggtagatgaa
ttcctaattcagctatcaaagctcactaaggaggacgaccagcaaagtgtgctgcaacat
atcactcgcagatgtacgggcaacgacctgaaatgcatcatcaggctaattaagcatgac
ttgaaaatgaacgctggcgcaaagcatgtgttggatgctttggatcccaatgcttatgag
gcgttcaaagcatcacgcaacctgcaggatgtggtggagcgagtcctgaagaaccagcag
gaggctgagaaggtgccaggtctgaagcgaaccctcagcgtgcaggcctctctgatgacc
ccagttcagcccatgctggctgaagcctgcaagtcaattgagtacgccatgaagaagtgc
ccaaacggcatgtatgcagagattaaatatgacggtgagcgggtgcaggtccataaaaat
ggagatcatttcagctacttcagcagaagcctcaaacctgtcctccctcacaaggtagcc
cattttaaggacttcatcccccaggctttccctggtgggcaaagtatgatcctggattca
gaagttcttctgattgataataaaaccggcaagccgcttccttttgggactcttggtgtg
cataagaaagctgctttccaagatgccaatgtttgcttgttcgtgtttgactgcatctat
ttcaatgacatcagcctgatggacaggcctctgtgtgaacgtcgtaagtttctccacgat
aacatggttgaaatccccaaccggatcctcttctcagagatgaagcatgtcacgaaagct
tcagatctagcagatatgatcacccgagtcatccgtgagggactggaaggactggtgttg
aaagatacaaagggtaattatgaaccgggaaagcgacactggctgaaggtgaaaaaggac
tacctaaatgagggcgcaatggctgacacagcagacctggtggtgctgggagctttctat
ggacaaggcagtaaaggtgggatgatgtccatcttcctcatgggctgctatgatcccaag
agtgagaagtggtgcactgtgaccaagtgttccggtggccatgatgatgccaccttggcg
cgtctgcaaacagagctggacatggtgaagatcagcaaggatcctagtaaaattccaagg
tggctaaaaattaacaaaatctactacccagacttcattgtcccagacccaaagaaagcc
ccggtgtgggagatcacaggggctgaattctctaaagctgaagcccacactgcagatggc
atctccattcgcttccctcgctgcacccgcattcgagatgacaaagactggaaaacagcc
accaacctccagcagcttaaggaactgtaccagctctccaaagagaaggctgatttcaac
gtggttgctggggaggaagatgagtccacggctggcagtagtggcgagaatgagggaaat
tccaggtcttccacgccacacagcactattaaaactcccccgagcaagtcgcccgcgaaa
gcccagaagccagaagaaagcaaagcagtcattggatcccctaaaaaatcagaggaaaag
cgaggggagaagcgaaaagcatctgagatggatgacaatggaaaaaagacgctgctggac
atattcactggtgtgaagctgtacctgtcgccctccgtgaaggacttcgacaaaatccgg
cggtattttatagcgtatgatggggaccttgtgccagagtttgacacagcctcagcaacg
catgttataggggacattgatgacaatcctggtgctaagcgtgtgtctcccaactggatc
tggcaatgcatccggaagcggagactggtagccccctgctag
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integrated database retrieval system
