Egretta garzetta (little egret): 104134678
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Entry
104134678 CDS
T05152
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
egz
Egretta garzetta (little egret)
Pathway
egz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104134678 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egz03019
]
104134678 (MTREX)
03041 Spliceosome [BR:
egz03041
]
104134678 (MTREX)
03009 Ribosome biogenesis [BR:
egz03009
]
104134678 (MTREX)
03016 Transfer RNA biogenesis [BR:
egz03016
]
104134678 (MTREX)
Enzymes [BR:
egz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104134678 (MTREX)
Messenger RNA biogenesis [BR:
egz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104134678 (MTREX)
Spliceosome [BR:
egz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104134678 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
104134678 (MTREX)
Ribosome biogenesis [BR:
egz03009
]
Eukaryotic type
Pre-60S particles
Helicases
104134678 (MTREX)
Transfer RNA biogenesis [BR:
egz03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104134678 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
104134678
NCBI-ProteinID:
XP_009646552
UniProt:
A0A091IQK3
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MADAFGDELFSVVEEDSAAAASGAKKSKAGATEGARRPGKRSEEKSSVAATGKAKREVEV
GSTEDAVLGKKPKLEDLVSEDANLADLMPQVKVQAVETVEGCTHEVALPADEDFTGLKPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGT
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNL
EGQYNKITIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDD
FGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQV
VPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQIAMDIKAAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMD
VVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgttcggggacgagctcttcagcgtggttgaggaggactccgccgccgcc
gcctccggcgccaagaagagcaaagcgggcgccaccgagggcgccaggagaccgggaaaa
cgatcggaggagaaatcttcagtagctgcgacagggaaggccaaaagggaagttgaggtc
ggcagtactgaagatgccgttttgggaaagaagccaaagttggaagatcttgtatcagaa
gatgctaatctggcagacctgatgcctcaagtaaaggtgcaagctgtggaaactgttgaa
ggttgtacacatgaggttgcacttccagcagatgaagacttcacaggtctgaagccaaga
actggaaaagctgcaaaagaatatccatttattcttgatgccttccagagagaagctatt
ctttgtgtcgataataaccagtctgtgttagtgtcggctcatacatcagctggtaaaact
gtttgtgcagagtatgcaattgccttggctttgcgggagaaacagcgtgtgatatttacg
agtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcaggat
gttggtttgatgactggggatgtcactattaatcctacagcttcttgtctggtaatgaca
accgagattttgagaagtatgctttacagaggttctgaagttatgcgagaagtcgcatgg
gttatttttgatgaaatccactatatgagagattcagaacgtggtgtggtttgggaagag
acaattattttgctccctgacaatgttcattatgtgttcctttctgcaactattccaaat
gcccgtcagtttgctgaatggatctgccaccttcacaaacagccttgccatgtaatttac
accgactatcgacccactccactgcagcattatatattcccagcaggaggagatggactc
catctggttgttgatgaaaatggagatttcagagaagataatttcaatacagcaatgcag
gtacttagagatgcaggagacttagcaaaaggggaccagaagggcaggaaaggaggaaca
aaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaacct
gtgattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgacaaag
ttagatttcaatacagatgaagaaaaaaagatggttgaagaagtgttcaataatgcaatt
gattgtctgtcagatgaagacaaaaagcttcctcaggttgagcacgtacttcctcttctg
aagcgaggaattggtatccatcatggcggtctgcttcctatcttaaaagaaaccatagaa
attcttttctctgagggcctaataaaggccttatttgcaacagagactttcgctatggga
attaatatgccagccaggactgtgctatttacgagtgccagcaaatttgatggaaaagat
ttcagatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccgaggt
atggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaattggc
aagcagcttttgaagggttcagctgatcctttaaacagtgcgttccacctgacgtacaac
atggtattgaacttgcttcgagtagaggaaattaaccctgaatacatgttagaaaaatcc
ttctatcagttccagcattacagaactattccagaaatagtagaaagagtgaataatttg
gaaggacaatacaacaaaataacaattcccaatgaagaaaatgtggtcatatactacaaa
atccgacagcagcttgcaaaactgggtaaagagattgaagaatatattcacaaaccaaag
tattgcttgccctttctacagccaggaagactggtaaaggtgaagaatgaaggtgatgac
tttggatggggagtggttgttaatttctctaagaaatcgaatgttaagccaaattctggt
gaattggacccattgtatgtagttgaagtgctactgcactgcagcaaagagagtttgaaa
aattctgctactgaggctgcaaagccagcgcgacctgatgagaaaggagagatgcaggtt
gttcctgttttggtacatcttctctcagctatcagcagtgtccgactttacataccgaaa
gacctgaggcctattgacaacaggcaaagtgtgttaaaatctatacaagaagtacagaag
cgatttcctgatggagtaccattactagaccctattgatgacatgggcatcaaagatcaa
ggactgaaaaaagtaatccaaaaagtagaggcatttgagcataggatgtattcacatcca
cttcacaatgatcccaacttggaaaccgtatacaaactttgtgaaaaaaaagcacagatt
gctatggatattaaagcagcaaagcgagaactgaaaaaagccagaacggtcttacaaatg
gatgaactcaaatgccgcaagcgtgttttgagaaggctggggtttgccacgtcttcagat
gttattgagatgaaaggacgggtcgcttgtgaaatcagcagtgctgatgaactacttctg
acagaaatgatgttcaatggtctcttcaatgacttatctgcagagcaggcaactgcacta
ctaagctgttttgtatttcaagagaattccagcgaaatgccaaaattgacagagcagttg
gcaggacctcttcggcaaatgcaggagtgtgcaaaaagaatcgccaaggtgtcagcagaa
gcaaaactggaaattgatgaagaaaattacttaaattctttcagacccaacctaatggat
gttgtgtatacatgggcaaatggagctaacttcgctcacatctgcaaaatgactgatgtc
tttgaaggtagcataattcgttgcatgagaagactagaagaattgcttcggcagatgtgc
caggctgcaaaagccattggaaatacggagttggaaaataagtttgcagaggggattaca
aaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
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