Ethanoligenens harbinense: Ethha_1047
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Entry
Ethha_1047 CDS
T01384
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eha
Ethanoligenens harbinense
Pathway
eha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ethha_1047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eha03019
]
Ethha_1047
03009 Ribosome biogenesis [BR:
eha03009
]
Ethha_1047
Enzymes [BR:
eha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ethha_1047
Messenger RNA biogenesis [BR:
eha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ethha_1047
Ribosome biogenesis [BR:
eha03009
]
Prokaryotic type
rRNA helicases
Ethha_1047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Arc_PepC
Motif
Other DBs
NCBI-ProteinID:
ADU26600
UniProt:
E6U4A0
LinkDB
All DBs
Position
complement(1156705..1158297)
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AA seq
530 aa
AA seq
DB search
MEENLFAKLGLSEDVLKAIDLMGFEEPSQIQTQAIPVILEGNDVIGQAQTGTGKTLAYSA
PVISLMEHGPHQVQALILVPTRELAIQVNDELVRINRFTHFTSIPVYGGQPIDRQIRALQ
KGVDIVVATPGRILDHIRRGTVDFSHVRFFVLDESDEMLNMGFIDDIQAVLDTLPAERQS
LLFSATMPMQIRKLAQQHMKPDVKNIVIAKSTLTATLTEQFYFEVKHRDRFETLCRILDV
DEPESAIIFCRTKRGVDELVENMQSRGYIVEGMHGDMGQNQRQNTLKKFRDGNLDFLVAT
DVAARGIDIENISHVINYELPEDAESYVHRIGRTGRANRTGIAYSLVTPREYIILKQIER
VTHGHIKRKEIPTVEDIYEVKYKNVLTKVKEELEKNDFEKFKPLASELDDEYNLVDVAAA
LLKISFENELNFDYASSEKAREVRQSAGETRLFLNAGRMDKVTPRDILRFLCDNSGFTRN
EIGHIDIFDKFSFANVSSSAADAIIASCAGLTLCGRPANVQVAQKRQQRY
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaatctgtttgcaaaactcggcctttcggaagatgttctgaaagccattgat
ctcatgggatttgaagagccgtcccaaatccagacacaggccatccccgtgattctggag
ggcaacgacgtcatcgggcaggcccagaccggcaccggtaaaacgctggcctattccgcc
cccgtcatcagcctgatggagcacggcccgcaccaggtgcaggcgctcattctggtgccc
acgcgcgagctggccatccaggtcaacgacgaactggtgcgcatcaaccggttcactcat
ttcacctccatcccggtctacggcgggcagcccatcgaccggcagatccgcgcgctgcaa
aagggcgtggacatcgtggtggccacgccgggacgcatcctcgaccatatccggcgcggc
acggtggatttcagccatgtgcgcttcttcgtgctggacgaatcggacgaaatgctcaac
atgggcttcatcgacgacattcaggccgtgctggacacgctgccggccgagcgacagtcg
ctgctgttctccgccaccatgccgatgcagattcgcaaactggcgcagcaacacatgaag
cccgacgtcaaaaacatcgtcatcgccaagagtacgctgactgccacgctcaccgagcag
ttttattttgaagtcaagcaccgcgaccggtttgagaccctctgccgcatcctggatgtg
gacgaaccggaaagcgccatcatcttctgccgcaccaagcgcggcgtggacgagctggtg
gaaaacatgcagtcgcgcggatatatcgtggaaggcatgcacggcgatatgggccagaac
cagcggcagaacaccctgaaaaaattccgcgacggcaacctcgatttcctggtggccacc
gacgtggctgcgcgcggcatcgacattgagaacatcagccacgtcatcaactacgagctg
ccggaggacgccgaatcctacgtccaccgcatcgggcgcaccggccgcgccaaccgcacc
ggcatcgcctacagcctggtgacaccgcgcgaatatatcatcctcaagcagattgagcgc
gtcacccacggccacatcaagcgcaaggagatccccaccgtcgaggatatctacgaggtc
aaatataaaaacgtcctcacaaaggtcaaggaagaactggagaaaaacgattttgaaaag
ttcaagccccttgcctcggagctggacgacgaatacaatctggtggacgtcgcggcggcg
ctgctcaagatctcgtttgagaacgagctgaatttcgactacgcctccagcgaaaaagcg
cgggaagtcaggcagagcgccggcgagacccgcctgttcctcaacgccggccggatggac
aaggttaccccgcgcgacatcctgcgctttttgtgtgacaattccggcttcacccgcaac
gagatcggccatatcgacatcttcgataaattctcgtttgccaatgtgtccagcagcgcg
gcagacgccatcatcgccagctgcgcgggcctgaccctctgcggccgccccgccaacgtg
caggtggcgcagaaacggcagcagcgttattaa
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