Empedobacter haloabium: E7V67_005365
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Entry
E7V67_005365 CDS
T09755
Name
(GenBank) rhamnogalacturonan lyase
KO
K18197
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ehb
Empedobacter haloabium
Brite
KEGG Orthology (KO) [BR:
ehb00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
E7V67_005365
Enzymes [BR:
ehb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
E7V67_005365
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RGL11_C
RGI_lyase
FG-GAP
FG-GAP_3
DUF1198
Motif
Other DBs
NCBI-ProteinID:
WUR14536
LinkDB
All DBs
Position
complement(1232512..1234362)
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AA seq
616 aa
AA seq
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MTRAVPPALRLAPIVLLATTLLQPAAADTGKQVEKLDRGVVAIATGGGVFVGWRVLGTDA
ADTRYNVYRDGARLNAAPLEASNLVDPAGTAAAQYVVRTVVKGSEKDKDSAGATWPQAVL
RIPVQAPAGGVTPDGVAYTYELNDGSAADLDGDGKYELVVKWQPTNAKDNSQSGYTGNTY
VDAYEWSGKRLWRIDLGRNIRAGAHYTTFLAYDFDGNGRAEVMMKTADGTIDGRGTVIGD
AAADHRNSAGYVLAGPEFLTVFDGRTGKALATTNYLPARGDVAAWGDKYGNRVDRFTGSV
AYLDGSRPSAVFARGYYTRAVVAAWDWRDGVLSSRWVFDTDVEGAAARGQGAHWFSVADV
DNDGRDDIVYGAATIGSDGHLLYSTNLCHGDALHVGKLDPARDGQQVFMVHESPGCYGTV
GAGMHDAATGKLLWSVPGNGRDVGRGVCMDIDPAFPGEECWASVGGLMSASGQQISTTRP
NRINFAAWWDGDLLRESLDGTGIDKWDPATLAFQRILEGATDGAASNNGTKATPVLSADL
LGDWREEVVLRSADNTALLVFATTAPTPYRIPTLMHDPQYRVQVAGQNAGYNQPPHPSFH
LGEGMKPVMPAPIRPR
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgacacgagccgtcccgcctgcgctgcgcctggcccccatcgtcctcctcgccaccacc
ctgctgcagccagccgccgccgacaccggcaagcaggtggaaaaactcgatcgcggcgtc
gtcgccatcgccaccggcggcggcgtgtttgtcggctggcgcgtgctgggcacggacgct
gccgacacccgctacaacgtctaccgcgatggcgcgcgcctgaacgcggcgccactggaa
gccagcaacctcgtcgacccggccggcacggcggcggcgcaatacgtggtgcgcaccgtc
gtcaagggcagcgagaaggacaaggacagcgccggcgccacttggccgcaagccgtgctg
cgcattcccgtgcaggccccggccggcggcgtcacgcccgatggcgtggcctacacctat
gagctgaacgacggctcggccgccgatctcgatggcgacggcaagtacgaactggtcgtc
aagtggcagcccaccaacgccaaggacaactcgcagtccggctacaccggcaatacctat
gtcgacgcctacgaatggagcggcaagcgcctgtggcgcatcgacctgggccgcaatatc
cgcgccggcgcgcactacaccaccttcctggcctacgacttcgacggcaatggccgcgcc
gaagtgatgatgaagacggccgacggcactatcgacgggcgcggcaccgtcattggcgac
gcggcggcggatcaccgcaacagcgccggctacgtgctggcagggccggagttcctgacc
gtgttcgacggccgcaccggcaaggccctcgccaccaccaactacctgcccgcgcgcggt
gacgtggccgcctggggcgacaagtacggcaaccgcgtcgaccgcttcaccggcagcgtg
gcctacctggacggctcgcgccccagcgcggtattcgcgcgcggctattacacgcgcgcc
gtggtggcggcctgggattggcgcgacggcgtgttgagcagccgctgggtgttcgacacg
gacgtcgagggcgccgcggcgcgcggccaaggcgcgcactggttctcggtggcggacgtg
gacaacgacggccgcgacgacatcgtctacggcgccgccaccatcggcagcgacggccac
ctgctgtacagcaccaacctgtgccacggcgacgcgcttcacgtgggtaagctcgatcct
gcacgcgacggccaacaggtcttcatggtgcacgaaagccccggttgctacggcaccgtc
ggcgctggcatgcacgacgcggccaccggcaagctgctgtggagtgtgccaggcaacggg
cgcgacgtgggccgcggcgtctgcatggacatcgacccggccttcccgggcgaggaatgc
tgggcctccgtcggtggcctgatgagcgcgagcggccagcagatctcgacgacgcggccg
aaccgcatcaacttcgccgcctggtgggacggcgacctgctgcgcgaatcgctggacggc
accggcatcgacaagtgggacccggccaccctggcgttccagcgcatcctggaaggcgcc
acggatggcgcggcctcgaacaacggcaccaaggccacgcccgtgctgtcggccgacctg
ctgggcgactggcgcgaggaagtggtgctgcgcagcgccgacaacacggccctgctggtc
ttcgcgacgaccgcgccgacgccctaccgcattccgaccctgatgcacgacccgcagtac
cgcgtgcaggtggcgggccagaacgccggctacaaccagccgccacaccccagcttccac
cttggcgaaggcatgaagccggtgatgccggcgccgatccgcccgcgctga
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