Empedobacter haloabium: E7V67_020745
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Entry
E7V67_020745 CDS
T09755
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ehb
Empedobacter haloabium
Pathway
ehb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ehb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E7V67_020745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ehb03019
]
E7V67_020745
03009 Ribosome biogenesis [BR:
ehb03009
]
E7V67_020745
Enzymes [BR:
ehb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E7V67_020745
Messenger RNA biogenesis [BR:
ehb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E7V67_020745
Ribosome biogenesis [BR:
ehb03009
]
Prokaryotic type
rRNA processing factors
E7V67_020745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMA7
Motif
Other DBs
NCBI-ProteinID:
WUR12108
LinkDB
All DBs
Position
4730276..4733464
Genome browser
AA seq
1062 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSY
GEDRHGFLPFKEVARSYFREGVDVRNATVKEALREGQEIMVQVEKEERGNKGAALTSFIS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELRETMDKLDLPQGMSVIARTAGIGRTVEELQ
WDLNYLMQLWRAIEGASKAASGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDEIYEQAH
QFMSHVMPDMVHRVKRYSDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARATRGSDIETTAFHTNCEAAEEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQR
LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCSGTGHIRDTESSALQ
VLRIIQEEAMKENSAAIHVQVPVDVAAFLLNEKRGEVLKIENRHRITVILVPNKHLDTPH
YKLERIKHDDPRLEDTAASYTMAEQAETDMAFAKRQKEEAKPRQEAVVKTITPSQPAPMV
DRKPAEPVAPVAPPPAPVAAPPAEQGFFAKLVSFFTGKQPEPVAPPTPAIVAKPVAPSAD
RTDKNARGPRARGRNGKGPREEREPGSREEGLKPTAEGRPARPPRPPREPREPREVREPR
EAVEGQAAPAARAERPERAERPERAERPERAPRPPREPREAREPREPKAQPAEAKAEELA
LAAAGVGPVGTGSAPATDTPGLVKSAGTANAGPEGEEFEGGEGGDEPRRRRRRGGRNRNR
REREGAEGVEGVEGETAFAAEGEGADKAAIVAVAVAENAETTAPVIVTQAPAEPAVSAAE
PAVQPAPQPAEAKPEQAPAVAQAADDVIVTPVTPPVTPPVLAPVAAETAAPAQAAAPAVE
PAEAEIVEAPAAEPLPPVVETAAHAPIIIPAPVEAAPVVAEVPVAPPAETKVEAPAVAEV
REPAPVPAVAEAKAEAVAEAAVPAPAPAPVPMQAAAPAPAPAADLDALLASAGLTMASTD
PAKLRAAQEAAAQEAPPAPVRRQRKPAAVVPDEPLVQVSTRQ
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaacgccacgcagcaggaagagctgcgcgtggcgattgtcgat
ggtcagaaactgatcgatatcgacatcgaaaccgccggacgcgaacagcgcaagtccaat
atctacaaaggcgtcatcacccgcatcgagccgtcgctggaagcctgcttcgtcagttac
ggcgaagaccgccacggtttcctcccgtttaaagaagttgcccgcagttatttccgcgaa
ggcgtcgacgtgcgcaatgccaccgtcaaggaagcgctgcgcgaaggccaggaaatcatg
gtccaggtcgaaaaggaagagcgcggcaacaagggtgcggccctgacctcgttcatttcg
ctggccggccgttacctggtattgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcgtcgagggcgaggaacgccaggaactgcgcgagaccatggacaagctggacctgccg
caaggcatgtccgtgatcgcccgcaccgccggcatcggccgcacggtcgaggaactgcag
tgggacttgaattacctgatgcaactgtggcgtgcgatcgaaggcgcgtccaaggccgcc
tccggcgccttcctgatctaccaggaaagctcgctcgtcatccgcgccatccgcgactat
ttccagcctgacatcggcgagatcctgatcgacaccgacgagatctacgaacaggcgcac
cagttcatgagccacgtgatgcccgacatggtgcatcgcgtcaagcgctacagcgacgac
gtgccgctgttctcgcgcttccagatcgaacaccagatcgagacggcctacagccgcacc
gtgccgctgccatccggtggcgccatcgtcatcgaccacaccgaagcgctggtttccgtc
gacgtcaactcggcccgcgccacgcgcggctcggacatcgagacgaccgccttccacacc
aactgcgaagcggccgaggaagtggcccgccagctgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaagtggccaagaaccagcgcgaggtggaacagcgc
ctgaaggacgcgctgcaccatgaccgtgcgcgtgtgcagatgggcaagatttcccgcttc
ggcctgatggaactgtcgcgccagcgcctgcgcccttccctgtcggaaggctcgcacgtg
acgtgcccgcgctgctccggcaccggccacatccgcgataccgaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaacagcgccgccatccacgtgcag
gtaccggtcgacgtggccgccttcctgctgaacgaaaagcgtggcgaggtgctgaagatc
gaaaaccgccaccgcatcaccgtgatcctggtgccgaacaagcacctggacacgccgcat
tacaagctggaacgcatcaagcacgacgatccgcgcctggaagacacggccgccagctac
acgatggccgagcaggccgagaccgacatggccttcgccaagcgccagaaggaagaagcc
aagccgcgccaggaagccgtcgtcaagacgatcaccccgagccagccggccccgatggtg
gaccgcaagccggccgagcctgtggcgcccgtcgcgccaccgccggcaccggtcgcggcc
ccgccggccgagcagggtttctttgccaagctggtgtcgttctttaccggcaagcagccg
gaaccggtggcaccgccgaccccggcgatcgtcgccaagccggtggccccgagcgccgat
cgtaccgacaagaacgcccgcggtccgcgtgcccgtggccgtaacggcaagggtccgcgc
gaggaacgcgagccgggcagccgcgaggaaggcctgaagccgaccgccgagggccgtcca
gcccgtccgccgcgcccgccgcgcgagccgcgtgagccacgcgaagtgcgcgagccgcgc
gaggcagtcgagggccaggccgcgcccgccgcccgtgcggaacggccggagcgcgccgag
cgtccggaacgtgccgagcgtcccgagcgcgcgccgcgtccaccgcgcgagccacgtgaa
gcgcgcgagccgcgtgaaccgaaagcccagccggccgaggcgaaagccgaggaactggcg
ctggcagcggccggtgtcggcccggtcggtacgggcagcgccccggccaccgatacgccg
ggcctggtgaagtcggccggtaccgccaacgcgggtccggaaggtgaagagttcgagggt
ggcgaaggcggcgacgagccgcgccgccgccgccgtcgtggcggccgcaatcgcaaccgc
cgcgagcgcgaaggcgccgagggcgtcgagggtgtcgaaggcgaaaccgcctttgccgcc
gagggcgaaggcgccgacaaggcggccatcgtggccgtcgccgtggccgagaacgccgag
acgaccgcgcccgtcatcgtgacgcaagcgccggccgaaccggctgtctccgcggccgag
cctgcggtacagccggccccgcagccggccgaagccaagcctgagcaggcgccagccgtg
gcccaggccgctgatgacgtcatcgtgacgccggttacgccgcccgttacgccgccggta
ctcgcgcccgtcgccgccgagacggccgcaccagcccaggctgctgccccggcagtcgag
ccggccgaagcggaaatcgtcgaggcaccggccgccgagccgctgccgccagtggtcgag
acggcggcgcacgcgccgatcatcatcccggcgccggtcgaggccgcgcccgtcgtggcc
gaggtaccggtcgcgccgccagccgaaaccaaggtcgaggcaccggcagtggccgaagtg
cgggaacctgcgccggtaccggccgtggcggaggccaaggccgaggccgtggccgaggcc
gcagtgccggcacctgcgccagcaccggtcccgatgcaggcagccgctccggcgccagca
cccgcggccgacctggacgccctgctggcctcggccggcctgacgatggcatcgaccgac
ccggccaagctgcgcgccgcgcaggaagcggccgcccaggaagcgccaccggcaccggta
cggcgccagcgcaagccggccgcggtcgttccggacgagccgctggtacaagtgtcgacc
cggcaatga
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