Empedobacter haloabium: E7V67_022650
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Entry
E7V67_022650 CDS
T09755
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ehb
Empedobacter haloabium
Pathway
ehb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ehb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
E7V67_022650 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ehb03021
]
E7V67_022650 (rpoD)
Transcription machinery [BR:
ehb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
E7V67_022650 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF4238
Motif
Other DBs
NCBI-ProteinID:
WUR12473
UniProt:
A0ABZ1UIJ9
LinkDB
All DBs
Position
complement(5232117..5234306)
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AA seq
729 aa
AA seq
DB search
MTAQAAKTADKSETSTPPVVSQTTDAAALAAIDTSGYVLPSVKVPGRRGRKPKEFQPEND
EVAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTEATEEELERRRQKLKTLIKF
GKERGFLTYAEINDHLPDNIVDPEAIEGIIGTFNDMGIAVYEHAPDAETLLLSDNVATVT
SDDEAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKDMI
QAISACPVTIAEIIATSDRIRNDETKIDEIVDGLVDENEDQPAAAAAPPATEDDEEDEEE
EEEEEEEEEEASPSGAAAGYSAEQLEAMKNAALEKFDEIANQFDKMRKAFEKEGYNSKAY
VRAQEAISNELLGIRFTAKVVEKLCDTLRGQVDEVRHIEKQILDVAVNKCGMPRAHFIKV
FPGNETNLEWVDGEVAANHAYSAILGRNIPTIKELQQRLIDLQARVVLPLPDLRNINRQM
AAGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY
KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAI
KMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPSDAALHASMRGVVK
DVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSD
KLKSFLEGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgcccaagcagcgaagacggccgacaagtctgaaaccagcacgccccccgtggtg
agccagacgacggacgccgctgccctggcggccatcgacacgtccggttacgtgctcccg
tccgtcaaggtaccgggccggcgcggtcgcaagcccaaggaattccagccagagaacgac
gaggtcgccgcgctcaacgcggtcgagcgcgccgagctgaaggccgtcgacaaggccaag
gcaaaggaccgcaaggccaaggaaaaggcgctgctgaaggacgcgttctcgtcggacacg
gaagcgacggaagaagagctggagcgccgtcgccagaagctgaaaacgctgatcaagttc
ggcaaggagcgcggcttcctcacgtatgccgagatcaacgaccacctgcccgacaatatc
gtcgatccggaagcgatcgaaggcatcatcggcacgttcaacgacatgggcattgccgtc
tacgagcacgcgccggacgccgaaacgctgctgctgtcggacaacgtcgccacggtgacc
agcgacgacgaggcggaagccgcggccgaggccgcgctgtccaccgtcgactccgatttc
ggccgcaccacggacccggtgcgcatgtacatgcgcgagatgggttcggtcgagctgctg
acgcgcgagggcgagatcgagatcgccaagcgcattgaggacggcctgaaggacatgatc
caggccatctccgcctgccccgtaacgatcgccgagatcatcgccacctccgaccgcatc
cgtaacgacgagaccaagatcgacgagatcgtcgacggcctggtcgacgagaacgaggac
cagccggccgccgccgcggcgccgccggccacggaagacgacgaggaagacgaggaagag
gaagaagaggaagaagaggaagaggaagaagccagcccgtccggtgcggcggccggctac
tcggccgaacaactcgaggcgatgaagaacgccgcgctggagaaattcgacgagatcgcc
aaccagttcgacaagatgcgcaaggccttcgagaaggaaggctacaactcgaaagcctac
gtgcgcgcgcaggaagcgatctcgaacgagctgctgggcatccgcttcacggcgaaagtc
gtcgaaaagctgtgcgacacgctgcgcggccaggtcgacgaagtgcgccacatcgaaaag
cagatcctggacgtggcggtcaacaagtgcggcatgccgcgcgcccacttcatcaaggtc
ttcccgggcaacgaaacgaacctggaatgggtggacggcgaagtggccgccaaccacgcc
tacagcgcgatcctgggccgcaacatcccgacgatcaaggaactgcagcagcgcctgatc
gacctgcaggcgcgggtcgtgctgccgctgccggacctgcgcaacatcaaccgccagatg
gcggccggtgaaatgaaggcgcgcaaggccaagcgcgagatgacggaagcgaacttgcgt
ctggtgatctcgatcgcgaagaagtacacgaaccgcggcctgcagttcctggacctgatc
caggaaggcaatatcggcctgatgaaggccgtggacaagttcgagtaccgccgcggctac
aagttctccacgtacgccacgtggtggattcgccaggccatcacgcgctcgatcgccgac
caggcccgcacgatccgtatcccggtgcacatgatcgagacgatcaacaagatgaaccgg
atcagccgccaaatactgcaggaaaccggcgcggagcccgatccagccaccctggcgatc
aagatggagatgcccgaggacaagatccgcaagatcatgaagatcgccaaggagccgatc
tcgatggaaacgccgatcggcgacgacgacgattcccacctgggcgacttcatcgaggac
aacaacacgctggccccatcggacgcggcactgcacgcctcgatgcgcggcgtggtcaag
gacgtgctcgattcgctgacgccgcgcgaagcgaaggtgctgcgcatgcgcttcggcatc
gagatgtccaccgaccacaccctggaagaggtgggcaagcagttcgacgtcacgcgcgag
cggattcgccagatcgaggcgaaggcgctgcgcaagctgcggcacccgtcccgctcggac
aagctgaagagcttcctggaagggaactga
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