Empedobacter haloabium: E7V67_024720
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Entry
E7V67_024720 CDS
T09755
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ehb
Empedobacter haloabium
Pathway
ehb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ehb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E7V67_024720 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ehb03021
]
E7V67_024720 (rpoC)
03400 DNA repair and recombination proteins [BR:
ehb03400
]
E7V67_024720 (rpoC)
Enzymes [BR:
ehb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E7V67_024720 (rpoC)
Transcription machinery [BR:
ehb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E7V67_024720 (rpoC)
DNA repair and recombination proteins [BR:
ehb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E7V67_024720 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Myosin_VII_N
PYNP_C
Motif
Other DBs
NCBI-ProteinID:
WUR12860
LinkDB
All DBs
Position
complement(5687968..5692209)
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQTNETFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFTAYM
GAEGIRELLRSIDIHRDAETLRVELKESKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEIQEPVVWDILEDVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKGEGMLFPDVSEVIRAYDNK
EVELATRITVRIVEHPRDPATGEFVRTVTRYETTVGRAILSEILPKGLPFSVLNRSLKKK
EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPDVKKSLIATAES
EVKQIEQQYASGLVTAGERYNKVVDIWGKTSDEVGKAMMDQLKVEDVVKRDGTQTTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTSNGTLMKAMVEGGEVIEALRDRI
LGRVAGTDIVNPETQETAYEAGTLLDEDMVEEIERMGIDEVKVRTPLTCDTRYGLCAKCY
GRDLGRGMLVNAGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR
FTATMRYVTNGKGAQIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGMAIKAGAPLA
TWDPLTRPIITEYAGTVRFENVEEGVTVARQVDEVTGLATLVVIDAKRRGSLTKTMRPQV
KLLNDDGHEVKIAGTEHAVAIGFQVGALIMVKDGQQVSVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQITNAGDTDYIVGEQVERSELLEENDKVIAAGKLPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPGGTGLAFHRARREKEVWEAEE
RNALLQAERAAMSGADVEAIETSTMTQDEGGEA
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccctgctcgatctattcaagcaagtacagacgaacgagacctttgacgcgatc
aagatcggtctcgcctcgcctgaaaaaatccgttcgtggtcctacggcgaagtcaagaag
ccggaaaccatcaactaccgtaccttcaagccggaacgcgacggcctgttctgcgccaag
atctttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtcatctgcgaaaagtgcggcgtcgaggtcacgctggcgaaggtgcgtcgtgag
cgcatgggccacatcgagctggcatcgccgaccgcccacatctggttcctgaagtcgctg
ccgtcgcgcctgggcatggtcctggacatgacgctgcgcgatatcgagcgcgtgctgtac
ttcgaagcctacgtcgtgaccgatccaggcatgaccccgctgaagaagtgccagatcatg
tcggaagacgactacgccgccaagtacgaagagtacggcgacgacttcaccgcgtacatg
ggcgccgagggcatccgtgaactgctgcgttcgatcgacatccaccgcgatgccgagacg
ctgcgcgtcgagctgaaggaatcgaagtccgaagcgaagatcaagaaatacgccaagcgc
ctgaaagtgctggaagcgttccagcgttcgggcatcaagcccgagtggatgatcatggaa
gtgctgccggtgctgccaccggaactgcgtccgctggtcccgctggatggcggccgtttc
gccacgtccgacctgaacgacctgtaccgccgcgtcatcaaccgtaacaaccgcctgaag
cgcctgatggagctgcgtgctccagagatcatcacgcgcaacgaaaagcgcatgctgcag
gaagcagtggactcgctgctggacaacggccgtcgcggcaaggcgatgaccggcgccaac
aagcgtccgctgaagtcgctggccgagatgatcaaaggtaagggcggtcgtttccgtcag
aacttgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggtccgcag
ctgaaactgcaccagtgcggtctgccgaagctgatggccctggagctgttcaagccgttc
atcttcaacaagctggaactgatgggcctggcgacgacgatcaaggccgcgaaaaagctg
gtcgagatccaggaaccggtcgtctgggacatcctggaagacgtgatccgcgaacacccg
atcatgctgaaccgtgcgccgacgctgcaccgcctgggtatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagctgcacccgctggtctgcgcggcattcaacgccgac
ttcgacggtgaccagatggcagtccacgtgccgctgtcgatcgaagcacagatggaagcg
cgtacgctgatgctggcgtcgaacaacatcctgttcccgtcgaacggcgaaccgtcgatc
gtgccgtcccaggatatcgtgctgggtctgtactacgcgacccgcgaagccatcaacggc
aagggcgaaggcatgctgttcccggacgtgtcggaagtgatccgcgcgtacgacaacaag
gaagtcgagctggccacccgcatcaccgtgcgtatcgtcgagcatccacgtgatccggcg
acgggcgagttcgtccgtacggtcacccgttacgagacgaccgtcggccgcgcgatcctg
tccgagatcctgccgaagggcctgccgttcagcgtgctgaaccgctccctgaagaagaag
gaaatctcgaagctgatcaacacgtcgttccgcaagtgcggcctgcgtgcgaccgtcgtg
ttcgccgaccagctgatgcagtcgggcttccgcctggcgacccgcgccggtatctccatc
tgcgtggacgacatgctggtgccggacgtgaagaaatcgctgatcgcgaccgccgaatcg
gaagtgaagcagatcgagcagcagtacgcctcgggtctggtcaccgccggcgagcgttac
aacaaggtcgtcgacatctggggcaagacctcggacgaagtcggcaaggccatgatggac
cagctgaaagtggaagacgttgtcaagcgcgacggcacccagacgacccaggaatcgttc
aacgcgatttacatgatggccgactcgggcgcccgtggctcggcagcgcagatccgccag
ctggccggtatgcgtggtctgatggcgaaaccggacggctcgattatcgagacgccgatt
acggcaaacttccgcgaaggcctgaacgttctgcagtacttcatctcgacccacggcgct
cgtaaaggtctggccgatacggcactgaagacggcaaactcgggttacctgacccgtcgt
ctggtcgacgtgacgcaggatctggtcgtgacggaagacgattgcggcacctccaacggc
acgctgatgaaggcgatggtcgagggcggtgaagtcatcgaggcactgcgcgaccgtatc
ctgggccgcgtggcgggcacggacatcgtcaatcctgagacccaggaaacggcgtacgaa
gccggcacgctgctggacgaagacatggtcgaggaaatcgaacgcatgggcatcgacgaa
gtcaaggtccgcacgccgctgacctgcgacacgcgttacggcctgtgcgccaagtgctac
ggccgcgacctgggccgcggcatgctggtcaacgccggtgaagccgtcggtgtcgtcgcg
gcacagtcgatcggtgaaccgggtacccagctgacgatgcgtacgttccacatcggtggt
gcggcgtcccgtgcagcggtggcctcgtcggtcgaagccaagtcgaacggtaccgtgcgc
ttcacggccacgatgcgttacgtcacgaacggcaagggcgcacagatcgtcatttcccgt
tccggcgaagtgctgatcaccgacgaccacggccgcgagcgcgagcgtcacaaggtgccg
tacggcgccacgctgatcgtcaaggatggcatggcgatcaaggccggcgcgccgctggcg
acgtgggacccgctgacccgtccgatcattaccgagtacgccggtacggtgcgcttcgag
aatgtggaagaaggcgtcacggtggcccgtcaggtcgacgaagtcaccggcctggcaacc
ctggtcgtgatcgacgcgaagcgtcgcggttcgctgaccaagacgatgcgtccgcaggtg
aaactgctgaacgacgacggccacgaagtgaagatcgccggcacggaacacgccgtggcg
atcggcttccaggtcggcgcgctgatcatggtgaaagacggccagcaagtatcggtcggt
gaagtcctggcgcgtatcccgacggaatcgcagaagacccgcgacattaccggcggtctg
ccgcgcgttgccgagctgttcgaagcacgttcgccgaaagacgcgggcatgctggccgaa
gtcaccggtacggtggccttcggtaaggaaacgaagggcaagcagcgtctggaaatcacg
gacatggacggcaacaagcacgagttcctgatcaccaaggacaagcaggtcctggtccac
gacggtcaagtcgtgaacaagggcgagatgatcgtggacggcccggccgatccacaagac
atcctgcgcctcttgggtatcgaagcgctggcacgttacatcgtcgacgaagtgcaggac
gtctaccgtctgcagggcgtgaagatcaacgacaagcacatcgaagtgatcgtgcgccag
atgctgcgccgcgtgcagatcaccaacgccggcgacaccgactacatcgtcggcgagcag
gtggagcgttcggagctgctggaagaaaacgacaaggtcatcgccgccggcaagctgcca
gcgacgtacgagaacgtgctgctgggtattaccaaggcatcgctgtcgaccgactcgttc
atctcggccgcatcgttccaggaaaccacgcgcgtgctgacggaagcggcgatcatgggc
aagcgcgacggtctgcgcggcctgaaggaaaacgtcatcgtcggtcgcctgatcccaggc
ggcacgggcctggccttccaccgcgcccgtcgcgagaaggaagtctgggaagccgaagaa
cgcaacgccctgctgcaagccgagcgcgcagcgatgagcggtgcggacgtcgaggcgatc
gagacatcgaccatgacgcaggacgagggtggcgaggcgtaa
DBGET
integrated database retrieval system
