Candidatus Erwinia haradaeae: ERCIPSTX3056_071
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Entry
ERCIPSTX3056_071 CDS
T05981
Symbol
rnc
Name
(GenBank) Ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
ehd
Candidatus Erwinia haradaeae
Pathway
ehd03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ehd00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
ERCIPSTX3056_071 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ehd03019
]
ERCIPSTX3056_071 (rnc)
03009 Ribosome biogenesis [BR:
ehd03009
]
ERCIPSTX3056_071 (rnc)
03036 Chromosome and associated proteins [BR:
ehd03036
]
ERCIPSTX3056_071 (rnc)
Enzymes [BR:
ehd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
ERCIPSTX3056_071 (rnc)
Messenger RNA biogenesis [BR:
ehd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ERCIPSTX3056_071 (rnc)
Ribosome biogenesis [BR:
ehd03009
]
Eukaryotic type
90S particles
RNase
ERCIPSTX3056_071 (rnc)
Prokaryotic type
rRNA processing factors
ERCIPSTX3056_071 (rnc)
Chromosome and associated proteins [BR:
ehd03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
ERCIPSTX3056_071 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
DND1_DSRM
DSRM_2
RM44_endonuclase
Motif
Other DBs
NCBI-ProteinID:
VFP86630
UniProt:
A0A451DIW0
LinkDB
All DBs
Position
1:116667..117347
Genome browser
AA seq
226 aa
AA seq
DB search
MDTVIMNHLQRKIGYFFKKIELLQQALTHRSSSRQNNERFEFLGDSILNCVISYAIYRSF
PCIDEGELSRMRSTLVRGYTLAEMAREFNLGSHLTLSRGEWKSGGYKRQSILSNAMEALI
GGIFLDSNMKTVERLILNWYDSRLHTIQPGNEQKDPKTRLQEFLQGNHLPLPFYLVSQIQ
GSEHHQSFTIQCTVSGITEPVVGTGFSRRQAEQETAQKALIKLGIE
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atggatacggtaatcatgaatcatctacagagaaagataggctatttttttaaaaaaatt
gaattattacaacaggcattaacacaccgcagttctagtcgtcaaaataatgaaaggttc
gagtttcttggggattctattttaaattgcgtaatttcttatgcaatttatcgaagtttt
ccatgtattgatgaaggtgagttgagtcgtatgcgttctacattagtacgtggctatacc
ttagccgaaatggcacgagagtttaatttgggttcgcatttaactttaagtcgaggagaa
tggaaaagtggtggctataagcgtcaatctattttatctaatgctatggaagctttaatt
ggtggcatatttttagatagtaacatgaagacggtagaacggttgattcttaattggtac
gactctcgtttacatactattcaaccaggaaatgaacaaaaagatcctaaaacgcgtctg
caagaattcttacaaggaaaccatcttccgctgccattttatcttgtatctcagatacaa
ggttcagagcaccatcagtcatttacgattcaatgcacagttagtggaataacagaacca
gtagtaggaactggttttagtcgtcgtcaagctgagcaagaaactgctcaaaaagcctta
attaagttgggtattgaatga
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