Candidatus Erwinia haradaeae: ERCIPSTX3056_131
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Entry
ERCIPSTX3056_131 CDS
T05981
Symbol
rne
Name
(GenBank) Ribonuclease E, partial
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ehd
Candidatus Erwinia haradaeae
Pathway
ehd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ehd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ERCIPSTX3056_131 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ehd03019
]
ERCIPSTX3056_131 (rne)
03009 Ribosome biogenesis [BR:
ehd03009
]
ERCIPSTX3056_131 (rne)
Enzymes [BR:
ehd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ERCIPSTX3056_131 (rne)
Messenger RNA biogenesis [BR:
ehd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ERCIPSTX3056_131 (rne)
Ribosome biogenesis [BR:
ehd03009
]
Prokaryotic type
rRNA processing factors
ERCIPSTX3056_131 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CHP02642
Motif
Other DBs
NCBI-ProteinID:
VFP86699
UniProt:
A0A451DJ89
LinkDB
All DBs
Position
1:219929..222910
Genome browser
AA seq
993 aa
AA seq
DB search
MKRMLINATQQEEWRVALVDGQCLYDLDIETIGYEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLSLKEISCEYFLENDNIRGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGTYLVLMPNNPRAGGISRRIEGDDRTELKATLSLLKLPDGMGLIARTAGVGKSVEAL
QWDLGFRIKHWEEIKKIASSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPQVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGIDIEETAFNTNLEAANEIARQLRLRDLGGLIVIDFIDMGPIRHQRAVE
HRLREEVRQDRARIQISHISRFGLLEMSRQRLSSSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEVLKENTKEVHAIVPVQVASYLLNEKRDAVSAIEKRPGGVRAIIVPSDNMQ
TPHYSVSRVRSGEETQTLSYHLSKLHEDEMGVLMDSTQVERKRPERPAITTVVIPGSSLG
SHRMDRSRKESNVSVETSGYTVIRQPSLVSRLIKECKKLFFSTETISKPSECAVISESII
KTSSLGVVSQQDPRKHHDLVDHVNKNIDHDNRQCDDRTYSADRNERDIRDSRSNHRNRRH
TQQISNHSKQISSEESETKRQIQSRQSRYRRRSDFKQLEHDLLDRSEQRAAPSVSVTNKI
EKQTQCASMELSRNVLSELKTVQQDTESPGGVIDVMSQSQESHLSIIPPILEPSNATLDL
SAHETKSGYTVVRRPRRSTRHSRFGGHRRRRHSDECDGQYSPMPLMHAMASPELAFGKIW
IDNSTISVKNFESSHRNIPSSPMAEIHKKNQLAFEGKASHATSANAEAKNVSESANNSLT
LLSQPGMSSHANSIPAIETKNSIKNTIHYVSVSSQLVTPIVQKKGIANDFVLVQNQKDMT
PQVNSAIDLGRYTSYSYAPVTKITLIEPDASDQ
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgataaacgccacgcagcaagaagagtggcgcgttgcacttgtcgat
ggacagtgtctatatgacttagatattgagacgatagggtacgaacagaaaaaggctaat
atctacaaaggcaagataactcgtgttgagcctagcttggaagctgcatttgttgattac
ggagcggagagacatggttttttatctctcaaggagatttcctgtgaatattttttagaa
aatgataatattcgtggtcgcccaaatattaaagatgttttgcgtgaaggacaggaagtt
attgtacaaattgataaagaagaacgcggtaataaaggagccgccctaactacatttatt
agcttagccggaacatatttagtattaatgcctaacaacccccgcgctggtggtatttct
cgacgtattgaaggtgatgacagaactgagcttaaggctactttatctttattgaagctt
ccggatggcatgggtttaattgcacgtactgctggggttggtaaatctgttgaagcatta
caatgggacttaggttttcgtatcaaacattgggaggaaattaagaagatagcaagtagc
cggccagcaccttttcttattcatcaggagagcaatgtcattgtacgtgctttccgtgat
tatttacgacaagatatcggtgaaattttaatagataatcctcaggtattggagttagct
cgtcagcatattgcggcgcttggtcgtccagattttactagcaaaattaaattatataca
ggagaaattccattatttagtcattatcaaattgagtcacagattgaatcagcttttcag
cgtgaagttcgtttaccatccggtggttcaattgttattgatagcacggaagctcttact
gctatagacatcaattctgctcgtgcgactcgaggtattgatattgaagagacagcattt
aacacaaatctagaagcagccaatgagattgctcgtcagctacggctacgtgatttaggt
ggattaattgtcattgattttattgatatggggccaatacgccaccaaagggctgtagag
catcgcctgcgtgaagaggttcgccaagatcgtgctcgtattcaaatcagccatatttca
cgttttgggttattagaaatgtcacgtcagcgcctgagttcatcactcggtgagtctagt
catcatgtatgtcctcgctgtagcggtacaggcacgatccgtgataatgagtcattgtca
ttatctattttgcgattaatagaagaagaggtgctaaaagaaaatacaaaagaagtgcac
gctattgtgccagtgcaggttgcttcatatttactaaatgagaaacgtgatgctgtaagt
gctattgaaaagcgccctggtggtgtgcgtgcgattatcgttccaagtgataatatgcag
acccctcactattcagtatcgcgcgtacgtagcggagaagaaacacaaactttaagctat
catctgtcaaaactgcatgaagatgagatgggggttcttatggattctacgcaagttgag
cgaaaacgtccagaaagaccagctataactaccgttgtcattccagggtcctcactagga
tcgcatagaatggatcgttccagaaaagaatctaatgtatctgtagaaacatctgggtat
accgtcatcagacaacctagcttagttagtcgtcttataaaagaatgtaaaaaattattc
ttctcaacagagacaataagtaaaccatcagagtgtgctgtcatttctgaaagcattatc
aaaacatcttcgctcggtgttgtttctcaacaggaccctcgtaagcatcatgatctcgtt
gatcatgttaataagaatatcgatcatgataaccgtcagtgtgatgatcgtacctatagt
gccgatcgcaatgaacgtgatattcgtgatagtcgcagcaatcatcgcaatcgtcgccat
actcagcagatatctaatcatagtaagcaaatctcttcagaagaatctgagaccaagaga
cagattcaatcacgacagtctcgttatcgtcgtcgctcagattttaagcagttggaacac
gatctgttagaccgatctgagcaacgtgctgcaccgagtgtgtcagtgactaataagata
gaaaaacagactcagtgcgcatcaatggaattgagtcgtaatgtcttgtcagaactaaaa
acagtacaacaagataccgaaagtcctggtggggttatagatgtcatgagtcaatcacaa
gaatctcacttatctataatacctcctatcttagagcctagtaatgctacattagattta
tctgcacatgaaactaaaagtggttataccgttgtgcgccggccacgtcggtcgacgcgc
cattcgcgtttcggtggtcatcgtcgccgtcgtcattctgatgagtgtgatggacaatat
tcacccatgcctttaatgcacgccatggcatcacctgagcttgcatttggtaagatttgg
attgacaactcaacgatatcagtgaaaaatttcgaatccagtcatcgcaatataccctct
agtcccatggcagaaatacataagaaaaatcaactagcattcgagggcaaggcgtctcat
gctacgtcagcaaacgcagaagctaaaaatgtatcagaaagcgccaacaacagcttgact
ttgctttctcaacctggcatgagttctcatgctaacagtataccggcgattgaaacaaaa
aattctataaagaataccattcattatgtatctgttagtagtcaactggtcaccccgata
gttcagaaaaaaggcattgctaatgattttgttctagtccaaaatcagaaggacatgact
cctcaggttaattctgcgatagatcttggtcgttatacaagttactcgtatgcgccagta
acaaaaattacacttatagaacctgacgcatcagatcaataa
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