Candidatus Erwinia haradaeae: ERCIPSTX3056_198
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Entry
ERCIPSTX3056_198 CDS
T05981
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ehd
Candidatus Erwinia haradaeae
Pathway
ehd03030
DNA replication
ehd03430
Mismatch repair
ehd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ehd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ERCIPSTX3056_198 (dnaE)
03430 Mismatch repair
ERCIPSTX3056_198 (dnaE)
03440 Homologous recombination
ERCIPSTX3056_198 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ehd03032
]
ERCIPSTX3056_198 (dnaE)
03400 DNA repair and recombination proteins [BR:
ehd03400
]
ERCIPSTX3056_198 (dnaE)
Enzymes [BR:
ehd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ERCIPSTX3056_198 (dnaE)
DNA replication proteins [BR:
ehd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ERCIPSTX3056_198 (dnaE)
DNA repair and recombination proteins [BR:
ehd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ERCIPSTX3056_198 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
VFP86766
UniProt:
A0A451DJB7
LinkDB
All DBs
Position
1:328749..332231
Genome browser
AA seq
1160 aa
AA seq
DB search
MPEPRFIHLHVRSDYSIRDGLTKISSLVIHAANMGMPAIAITDFTNLFGLIKFYKLAHEH
GLKPIIGADFRISCHIIGNELANITILAANNQGYKNLTLLISRAYLRGYGSHGPTIERAW
LLDHQEGLILLSGGHQGDVGKMLLRGNTIQAEAFLNFYQENFPNRYYLVLSRTGRINEEI
YLYAALELARSYTIPVVATNDVRFLSLSDFEAHEIRVAIQNGYTLGDPQRPVSYSAQQYL
RSEEEMCKLFSDIPEALENSIEITRRCNVTIQLGEYFLPQFPTGKISTEDYLIQKSQYGL
EARLAHRFPDQNVRMLHREHYKQRLNKELQVINQMGFPGYFLIVMEFIQWSKAHGIPVGP
GRGSGAGSLVAYVLKITDIDPLEFNLLFERFLNPERISMPDFDIDFCMEKRDLVIEHVAN
TYGRHAVSQIITFGTMAAKAVIRDVGRVLEHPYIFVDRIAKAVPSDPGMTLEKALKYSPS
LMELYNTDEEVKSLIDMARKLEGVTRNAGKHAGGLVIAPTKITDFSPLYCDENGQNPVTQ
FDKNDVEYTGLVKFDFLGLRTLTILDWALVMINARRKKNSLKSIEISKISLSDQKSFQIL
KNAETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFINRKQGREK
ISYPDIQWEHKLLQPVLESTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKNPIEM
AKQRGIFEQGAKEKGIDATLAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWIKAHYPA
EFMAAVMNADIDNTEKIVVLVNECWRIGLKVLPPNINSGLHQFYVNDKSEIVYGLGAIKG
VGLGPITEIIKSRNQGGCFCDFFSFCVRINTKKINRRVLEQLITSGALDCLGQHRAALIS
ALPDAIKSANQHSKAEEIGQSDIFGVLLDSQDLVSKGYFNVKPWAENVQLEREREALGFY
LTGHPINPYLEEISHYISGHRLKDVHPTQKGEMTTVAGVVVSSRVIATKNGQRMGVCTLD
DHSGKIEVKLFPDVLDKFKYLLDKDRVLIVTGQVSIDRFYGGMQITARKITDLNIARAQH
TRYLSIFVRNSNIDLTFIQNLHDVLASYRPGSTSVKLHYQGSNYRVTLCFGESWRILLHD
GLLNDLRLLIGLDKVKLEFY
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgccagaacctcgctttattcatttacacgtccgtagtgactactctataagagatggt
ttaacaaaaatatcgtcattagtaatacatgcagcaaatatggggatgccagccattgct
attacggactttactaatctatttggtctgattaagttttataagctagcgcatgagcac
ggtcttaaaccaatcataggtgctgattttagaatcagttgccacataataggtaatgaa
ctggccaacatcacgatactagcagctaataatcaaggttataagaacctgacgctttta
atttcacgcgcctatttacgtggttatggatcacatggtccaacgatagagcgtgcttgg
ttactagaccatcaggaaggtctgatattactatctggtggacatcaaggtgatgtcggt
aaaatgttattacgtggtaatacaatacaagcagaagcgttcttgaacttttatcaagaa
aattttcctaacagatactatcttgtattgagccggaccggtagaattaatgaagagata
tatttatatgcagcgctagagttagcaagatcctatactattcctgttgtcgccactaac
gatgtacgttttctctctttgtcagactttgaggctcatgaaattcgtgtagcaatacaa
aatggatatactttaggtgatcctcaacgccctgtctcctatagtgcacagcaatattta
cgtagcgaagaggaaatgtgcaaacttttctcagatattcctgaggcattagaaaatagt
atagaaatcactcgtcgttgtaatgtaactattcagcttggtgagtattttttaccacag
tttcccactggaaaaatatctacagaagattatttgattcaaaaatctcagtatggcctc
gaggctcgtttagcgcatcgttttccagatcaaaatgtacgtatgctccatcgcgagcat
tataagcagcgactaaataaagagttacaggtgattaatcaaatgggcttccctggttac
tttttaattgtgatggaatttattcagtggtctaaagcgcatggaattccagtaggtcct
ggtcggggctctggggctggctcattagtagcttatgttctaaaaattactgatatagat
ccactagagtttaatttattatttgagcgctttttaaatccagaacgtatatcaatgcct
gattttgatattgatttttgcatggaaaagcgtgacttagtcattgaacacgtagcaaat
acatatggtcgccacgcagtgtcacaaattattacttttggtacaatggcggcaaaagca
gtgatacgcgatgtagggcgtgtattagagcacccttatatttttgttgatcgtattgct
aaggcggttccatcagatccaggtatgacattagaaaaagctttaaagtactctcctagc
ttaatggagctctataatacagatgaagaagtaaaatctcttatcgatatggcgcgtaag
ctagaaggtgtgacacggaatgctggtaagcatgccggaggtttagtgattgcgccaaca
aaaattactgatttttcgccattatattgtgacgaaaatggccagaatccagtgactcag
tttgataaaaacgatgtagagtacactggtttagttaaatttgattttctcggattgcga
acattaactattctcgactgggcgttggtaatgattaatgcgcgtcgcaaaaaaaatagt
cttaaatcgattgagatttctaagatttcactttcagatcaaaaaagctttcaaatatta
aaaaatgctgaaactactgcagtatttcaattagaatcacgtggcatgaaagacttaatt
aagagattacagccggattgttttgaagatattattgctttagttgcactcttccgtcct
ggaccattacaatccggtatggtggacaactttattaatcgtaagcaaggaagagaaaaa
atatcgtatccagatatacagtgggagcataagttgcttcagccggtgcttgagtcaacc
tacggtataatcttgtatcaagagcaggttatgcaaattgctcaggttttagctggttat
agcctaggcggtgcagatatgttgcgtcgagccatgggaaaaaaaaaccctatagaaatg
gctaaacaacggggtatttttgaacaaggagctaaagaaaaaggcatagatgctacacta
gcaataaagatctttgatttagttgagaaatttgctggatatggttttaataaatcacac
tctgctgcttatgctttagtatcttatcagacgctatggatcaaagcccattatccagct
gaatttatggcagcagtaatgaatgctgacatagataatacggaaaaaatagttgtttta
gtaaatgaatgttggcgaataggcttaaaggttctaccaccaaatataaattctggatta
catcaattttatgttaatgataaatcagaaattgtttatgggcttggtgctatcaagggg
gttggtttaggtccaattacagaaattattaaatcgagaaatcaaggcggttgtttttgt
gattttttttcattctgtgtacgcattaatactaaaaaaattaatcgtcgagttttggag
caattgattacatctggtgctttagattgcctaggtcaacatcgggccgccttaataagt
gcgctacctgatgctattaaatctgccaaccaacacagtaaggcagaagagataggacaa
tccgatattttcggagtattattagattcacaggatttagttagcaaagggtattttaat
gtcaaaccttgggcggaaaatgttcaattagaaagggaaagagaagcattgggcttttac
cttactggtcaccctattaatccgtatttagaagaaatttcgcactatattagtggtcat
cgcttaaaagatgtacatccaactcaaaaaggagaaatgactactgttgctggtgtagtg
gtgtcatctcgggttatagcaacaaaaaatggtcagcggatgggtgtgtgtacattagat
gatcattcgggtaaaattgaagtaaaattatttcccgatgtattggataaatttaaatac
cttttagataaagatcgtgtcttaattgttactggtcaggtgagtatcgataggttttat
ggtggaatgcaaataacagctcgtaagattactgatcttaacatagctcgtgcacaacat
acgcgttatctttcgatttttgtacgaaatagtaacatagatttaacgtttatacagaat
ttacatgatgtattggcatcatatcgtccaggaagtacttctgtgaaattacactaccaa
ggaagtaattaccgagttacattatgttttggtgagtcgtggagaattttattacatgat
ggcttattaaatgatttaaggctcttaataggattggataaagtaaaattagaattttat
taa
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