Candidatus Erwinia haradaeae: ERCIPSTX3056_299
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Entry
ERCIPSTX3056_299 CDS
T05981
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ehd
Candidatus Erwinia haradaeae
Brite
KEGG Orthology (KO) [BR:
ehd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ERCIPSTX3056_299 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ehd03021
]
ERCIPSTX3056_299 (rpoD)
Transcription machinery [BR:
ehd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ERCIPSTX3056_299 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID:
VFP86873
UniProt:
A0A451DJL7
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Position
1:complement(474003..475841)
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AA seq
612 aa
AA seq
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MEHNPQSQLKLLVTRGKEQGYLTYSEINDHLPDDIVDSDQIEDIIQMINNMGIQVVEEAP
DADELILNENSSDTDEDAVEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYEKVQLDEARLSDLITGFVDPNAEVDIAPST
THISVDLPLEEDSDNEDDDSDDETSDDEHNIDAELAHEKFSALRNQYEITRTVIKSRSRN
HVNALEEIKNLSDVFKQFRLVPKQFELLVNSMRIMMERVRTQERLIMKLCVEWCKMPKKS
FITLFTGNETNDNWFQIAITMNKRWSEKLKDVSNDVAYSLKKLQEIEQETGLTIEQVKDI
NRRMSIGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEIGREPTPE
ELAERMLIPEDKIRKVMKIAKEPISMETPIGEDEDSHLGDFIEDTALELPLDSATSESLR
VATYDVLEGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLKSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcacaacccacagtctcagcttaaattacttgttacacgtggcaaagagcaagga
tatctaacttattctgagatcaatgatcatcttccagatgatatcgtagactccgatcag
attgaagatatcattcaaatgattaataacatgggcattcaggtcgtagaagaagcacct
gatgctgatgaattaatacttaacgagaatagcagcgatactgacgaggatgctgtagaa
gcagccgctcaagtgctatctagtgttgagtctgaaattggacgcacaactgatccggta
cgcatgtacatgcgtgaaatgggcacggttgaactgttaacacgtgagggtgagattgat
attgccaagcgcattgaagatggaattaatcaagttcaatgctctgttgctgaataccca
gaagcaattacatatcttttagaacagtatgagaaggtgcaattagatgaagcccgtctc
tctgatttaattactgggtttgttgaccctaacgcagaggtagatatagcaccttctacc
actcatattagtgtggatctaccgttagaagaagacagtgataatgaagatgatgactct
gacgatgagacttcggatgatgaacacaatattgatgctgaattagcacatgaaaagttc
agtgctttgcggaatcaatatgaaatcactcgtaccgtgattaaatcgagaagtcgcaac
catgttaatgctcttgaagaaatcaaaaacctatctgatgtatttaaacagtttcgacta
gtcccaaaacaatttgaattactcgtaaatagtatgcgtattatgatggaacgcgtacga
acgcaagaacgcctgattatgaaactatgtgtagaatggtgtaaaatgcccaaaaaaagc
tttattaccttgtttactggtaatgaaacaaatgataattggtttcaaattgcaataact
atgaataaacgatggtcagaaaaacttaaagacgtttcaaatgacgtagcatacagccta
aaaaaacttcaagagattgaacaggaaactggcttaactattgaacaagtgaaagacatc
aaccgtcgcatgtctattggtgagttaaaagcacgccgggctaaaaaggaaatggttgaa
gcaaatctaagactagtcatttcgatcgccaagaaatacaccaatcgtggtctacaattt
ttagacttgatccaagagggtaatattggtttaatgaaagcagtagataaatttgagtat
cgtcgcggttataagttttcaacttatgcgacatggtggattcgtcaggcgattactagg
tcgatcgccgatcaggcacgtacaatccgtattccagttcatatgattgagaccattaat
aaactgaaccgaatttcacggcagatgttacaagaaataggtcgtgaaccaacaccggaa
gagttagctgagcgaatgctgataccagaagataaaattcgcaaagtaatgaaaattgct
aaagaaccgatatctatggaaactccgattggagaggatgaagattcgcacctaggagat
tttattgaggacactgcgctagagctcccactagattcagcaacgtctgaaagtctccgt
gtcgcaacatatgatgtactagagggacttactgcacgtgaagcaaaagttttgcgtatg
cgttttgggattgatatgaatactgatcatacattagaagaagttggaaagcaatttgac
gtaactcgagaacgtattcgtcaaattgaagcaaaggcactacgtaaattacgtcacccc
agtcggtcagaagttttaaaaagctttttggacgactag
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