Candidatus Erwinia haradaeae: ERCIPSTX3056_491
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Entry
ERCIPSTX3056_491 CDS
T05981
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ehd
Candidatus Erwinia haradaeae
Brite
KEGG Orthology (KO) [BR:
ehd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ehd03016
]
ERCIPSTX3056_491 (rnb)
Enzymes [BR:
ehd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ERCIPSTX3056_491 (rnb)
Transfer RNA biogenesis [BR:
ehd03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ERCIPSTX3056_491 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
VFP87280
UniProt:
A0A451DKM2
LinkDB
All DBs
Position
1:789720..791675
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AA seq
651 aa
AA seq
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MLQDNPLLVQLKNTFQSKLRYVEGVVKGTSKGFGFLEVKPQKSYFIPPPYMKKVMHGDRI
IASIKNEKDRLIAYPEKLIQPFLKRFIGRIEKKNNYLFIIPECFLLKQAIQCKPNIHFMK
HTFQEGDWTVAEMLHHPLTGSHNFFAEIIEFITNEKNNLAPWWVTLARHNLERESPNIES
PTEMLDEALERLDLTKMPFITIDSANTEDIDDALYIEDIGRGNLKLIVAIADPTAYVSVG
SAIDAAASERSFTNYLPGLNIAMLPRHLSHDVCSLRPNKRRPVLACRVTISPDGEPNNDV
QFFAAWITSQAQLIYNNVSDWLENPQQSNWQPKNAIISKQISLLNRLRLARNQWRKEHAL
LFPDRPDFRFLLDKTGGVIDIVAEHRRIANRIIEESMILVNICAANLLRDTFGFGIYNVH
LGFDPTHREQAARVLASYGINAHPVEIATLNGFRVLRRQLDTQPNQFLHTRIRRFQLLSE
IKTTPGPHFGLGLDVYATWTSPIRKYGDMVNHRLLKAIIKGENGVRPSTSLTTKMSERRR
QNRMAERDISDLLYSRFLQKSAGSTKRFTAEVIDVLKGGIRIRLRDNGAVAFIPSSFLSE
EHDGLIFSHIHGHVKNNSITLYRVTDIIEVVIVAVRINTRNIIARPAPKHP
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgctacaagataacccactattagtacagctaaaaaacacattccaatcaaaacttagg
tatgtagagggtgtagtaaaaggcacttcaaaaggttttggctttttagaggtcaagcca
caaaaaagttactttattccgccaccatatatgaaaaaagttatgcatggcgaccgcatc
atagcgagcattaagaacgaaaaagatcgtcttattgcttatccagaaaaactgatacaa
ccttttcttaaacgttttattggacgaatagagaaaaaaaataactacctatttattata
ccggagtgcttcctgctaaagcaagcgatccagtgtaaaccaaatatacattttatgaaa
catactttccaggaaggtgattggacagtagcagagatgctacatcatccactcacagga
agccacaattttttcgctgagattattgaattcataaccaatgaaaaaaacaacctagct
ccatggtgggttactctagcgcgtcataatcttgagcgtgaatcgcctaatatagaatcc
ccaacagaaatgctagatgaagctctagagcgtctagatcttaccaaaatgccttttatc
actatcgatagcgccaacactgaggatatcgatgatgcattatacatagaagatatcgga
cggggtaatctcaaacttattgttgctattgctgatccaaccgcttatgtatctgttggt
agcgcaatcgacgcagcagcttctgagagatcatttaccaactacctacctggtttgaat
attgcaatgctaccgcgccacttatcacatgatgtctgttctttacgcccaaacaagaga
cgaccagttctagcttgccgagttacgatttctcctgatggggaacctaataacgatgtt
cagttctttgctgcttggattacctcccaagctcaactgatctataacaatgtttctgat
tggttagagaatcctcaacaaagcaactggcaaccaaaaaatgcgattatttctaaacaa
ataagtctactaaatcgactgcgtctagcacgtaaccaatggcgaaaagaacatgcgctt
ttatttccggatcgtccagactttcgttttttattagacaaaacaggtggcgttatagat
attgttgctgagcatagacgtattgcaaaccgtattattgaagaatcaatgatccttgta
aatatttgtgccgctaacttgctacgtgatacatttggttttggtatatataatgttcat
cttggatttgatccaacccatagagagcaagcagccagagtactagctagttatggtata
aacgctcatccagtagaaatagctacattaaacggatttcgtgtactacgccgacaacta
gatactcaaccaaaccagtttcttcatactcgtattagacgcttccagctgttatctgaa
attaagactacccccggtccccactttggcctaggactagatgtttatgccacctggaca
tctcctattcgaaaatatggagatatggtcaaccatcgcttactcaaggctattattaaa
ggtgaaaatggcgttcgccctagcacctctctcacaacaaaaatgtctgagcgtcgccgg
caaaatcgtatggccgagagagacataagtgatttactttactcacgttttttacaaaaa
tcagctggtagcactaaaagattcactgctgaagtgattgatgtattaaaaggtggtata
cgtattcgcttgcgagataacggtgcagtggccttcattccttcttcatttctttcagaa
gaacatgatggactgattttcagtcatattcatggccatgtaaaaaataacagtataaca
ctttaccgcgtaaccgatattatagaggttgtgattgtagcagtaagaataaacactcgt
aacattattgcacgtccagcgccaaaacatccatga
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