Encephalitozoon hellem: EHEL_060320
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Entry
EHEL_060320 CDS
T02287
Name
(RefSeq) RNase PH-like exoribonuclease
KO
K03678
exosome complex component RRP45
Organism
ehe
Encephalitozoon hellem
Pathway
ehe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ehe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHEL_060320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ehe03019
]
EHEL_060320
Messenger RNA biogenesis [BR:
ehe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
EHEL_060320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH_C
DUF1040
RNase_PH
Motif
Other DBs
NCBI-GeneID:
13467307
NCBI-ProteinID:
XP_003887387
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All DBs
Position
VI:45342..46013
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AA seq
223 aa
AA seq
DB search
MIVKNLAGIKERFDNRKIEELREFGVERISNSCLVRMGASQLLATFQKSTSKPYIDRPHE
GIISFSASTGGKRYERLLNFLHKVYIKQKSIDLESLCVKLNEEVVFIHIDLRVLSSDGNI
YGLAVKGVNSVLEALGVRVNYVPQCFSYCSIGSVIITDPSEDEQKEGDWNCVIVMKSPKE
IVLLEKVGKECEIENMLEVVERSARSFVMRIPGAEGLEECMSA
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgaaaaatttggcagggattaaggaaaggtttgacaacagaaagatcgaggaa
ctgagagaattcggggttgagaggatatcaaattcttgcctcgttaggatgggagcatcc
cagctgttggcaacattccagaaaagcacgtcgaagccatacattgacaggccccatgaa
ggaataataagcttcagtgcgtctactggagggaagagatacgaaagattactaaacttc
ctgcacaaggtatatatcaagcagaagagcattgatttggaaagcctgtgtgtcaagctg
aatgaagaggttgtattcattcacatagacctgagagttttgtcaagcgacggaaacatc
tatggtcttgctgttaaaggggtgaattctgttttggaggcactcggtgtgagagtgaat
tatgttcctcagtgtttttcctactgttcgatcggaagtgtaattattactgatccctca
gaggatgagcaaaaggagggagactggaattgcgttattgtgatgaagtctcctaaagag
atagttcttctagagaaggtgggaaaggagtgtgagatagagaatatgcttgaggttgtt
gagagatctgccagaagctttgtgatgcgaattcctggagcggaaggcttggaggagtgc
atgagtgcttga
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