Ehrlichia japonica: EHF_0413
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Entry
EHF_0413 CDS
T03078
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ehh
Ehrlichia japonica
Pathway
ehh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ehh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHF_0413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ehh03019
]
EHF_0413
03009 Ribosome biogenesis [BR:
ehh03009
]
EHF_0413
Enzymes [BR:
ehh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EHF_0413
Messenger RNA biogenesis [BR:
ehh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EHF_0413
Ribosome biogenesis [BR:
ehh03009
]
Prokaryotic type
rRNA processing factors
EHF_0413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
KH_11
Motif
Other DBs
NCBI-ProteinID:
AHX04550
UniProt:
X5H3A5
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All DBs
Position
437780..439624
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AA seq
614 aa
AA seq
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MSDHSKRILIDAVYQDGIRVAVLRDGQVVEFDQESKSKKCLKGNVYCAVVKRIEPSLQAV
FIEYGANKHGFLPFSEISLNYYNISEGEKEKLYQVLYEDSDIKNNDDIKNDDDIKSVDDS
VICDSKDQGDVSHYNEKLTLLKKDNLKNGKSKLPFYKLYKVQDVIKLDQKLMAQIVKEER
GNKGATFSTFITLVGRYCIFMPNSGNKNSGISRRIEDADDRKVLKNFLSAIKLPKESGMI
IRTAGSNKSQRDIEQDLSYLQSTWRSIQNSYVSITMPSLLYVEGDIIKRTLRDYCDENTQ
DIIVSGSYAYELAKECVKFMFRNRVRLRIYKGSVPIFSYYKVESQISELYGNIVNLPSGG
YMVITPTEALVSIDVNSGKMTGEDSIEETAYKTNMEAVKEIARQVNLRGLSGLIVIDFID
MLKYRYCRSVESEIKEAFKYDKAKVQFGYISAFGLMEISRQRVKQSILEANTVQCLHCKG
VGRVRSLESSSGDILRNIRYCANKNRNKLINISVAGQMVEYFFNNKRQHIAEIEEEFSVS
IKLTVNQNTSSTSDFNVSVENDDMLNQSKDVVNVFTVDYKVSEDNKLKEEIQNTPTGNMW
IKKWLSRIFSQFNS
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagatcatagtaaaaggatattaattgatgcagtatatcaagatggaattagagta
gcagtattacgtgatgggcaagttgtagaatttgatcaagagtcaaagagtaaaaagtgt
ttgaaaggtaatgtgtattgtgctgtagtaaaacgtatagagccatctttgcaggcagta
tttattgaatatggagcaaataagcacgggtttttacctttttctgaaatatcattgaat
tattataatatatctgaaggggagaaagaaaaattatatcaagtattgtatgaagattct
gatataaaaaataacgatgatataaaaaatgatgatgatataaaatctgtagatgattct
gttatatgtgatagtaaagatcaaggagatgttagccattataatgaaaagttgacattg
ttaaaaaaagataatttgaagaatggtaaatctaaattgcctttttataaattgtataag
gtacaagatgtaataaagcttgatcagaagttaatggcacagattgtaaaagaggagcgt
ggaaacaagggggcaactttttcgacttttattactctggttggtagatattgtatattt
atgccgaattctggtaataagaacagtggtatatctcgtcgtattgaggatgctgatgat
agaaaggttttgaagaattttctgagtgctataaaactaccaaaagaatctggtatgatt
attagaactgctgggtctaataaaagtcaaagagatatagagcaggatttgtcttattta
caatcaacttggcgaagtatacagaatagttatgtaagtattactatgccatcattatta
tatgttgaaggtgatataataaagagaacattacgagattattgtgatgaaaatacacaa
gatattattgtatctggtagctatgcgtatgagttagcaaaagaatgtgttaaatttatg
tttaggaatagggtgcgtcttagaatttataaaggtagtgttcctattttttcttattac
aaagttgaatcgcaaatttctgagctatacggaaatatagttaatttaccttctggagga
tatatggttattactccaacagaagcattagtatcaatagatgttaattctggtaagatg
acaggtgaggacagtattgaagaaacagcttataaaacaaatatggaagctgttaaagaa
attgctagacaagttaatctaagaggattatctggattgatagtgatagatttcattgat
atgttaaaatatcgctattgtagatcagtagaatctgaaattaaagaagcttttaaatat
gataaagcaaaagtgcagtttggctatataagtgcatttggattgatggaaatatcgaga
caaagagtcaagcaaagtatattagaagcaaatacagtacagtgtttacattgcaagggt
gtgggtagagttagatccctagaatcttcttctggagatatattacgtaatattagatat
tgtgctaataagaatcgtaataagttgataaatatctctgttgctggacagatggtagaa
tatttttttaacaataagcgtcaacatattgctgagattgaggaagaattcagtgtatca
attaagttgactgttaatcagaatacaagtagcacatcggattttaatgttagtgttgaa
aatgatgatatgttaaatcaaagtaaagatgttgtaaatgtgtttactgttgactataag
gtttctgaagataataaattaaaagaagaaatacaaaacactcctactggaaatatgtgg
ataaagaaatggttaagccgtatattttcacaatttaattcataa
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