Ehrlichia japonica: EHF_0539
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Entry
EHF_0539 CDS
T03078
Name
(GenBank) formamidopyrimidine-DNA glycosylase H2TH domain protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ehh
Ehrlichia japonica
Pathway
ehh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ehh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EHF_0539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ehh03400
]
EHF_0539
Enzymes [BR:
ehh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
EHF_0539
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
EHF_0539
DNA repair and recombination proteins [BR:
ehh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
EHF_0539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Motif
Other DBs
NCBI-ProteinID:
AHX04657
UniProt:
X5GC35
LinkDB
All DBs
Position
complement(600310..600891)
Genome browser
AA seq
193 aa
AA seq
DB search
MPELPEVEIICRTLSTEILNKTILNIEINRYDLRIPVTRDLCDIAIDNSISQITRKGKYI
ILMLSNQYYIIIHLGMSGNLICNENYIKQKEHNQIIFYLSDNKLLTFNDPRRFGIVISLN
YNQYTEFFKDFGIDALSGEFNTDYLYSTVHKKCTIKSLLMNNKFVIGIGNIYSTESLFLA
GISPNRLVKIYQL
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atgccagaactacctgaagtagaaataatttgtagaacattatctactgaaattttaaac
aaaactatattaaatatagaaatcaatagatatgatttacgtataccagttacacgggat
ctatgtgatatcgctatagataattctatatctcaaataacccggaagggtaaatatatt
attttaatgctcagcaatcagtattacataattatacatttaggtatgagtggcaatttg
atttgtaatgagaattatattaaacaaaaagaacataatcagataattttttatcttagt
gataataaattacttacttttaatgacccaagaagatttggaatagtgatatcattaaat
tataatcaatatacagaattttttaaagattttggtattgatgcactatctggcgagttt
aatactgattatttgtatagtactgttcataaaaagtgtactataaaatctttattgatg
aataacaaatttgttattggtataggtaatatatattctacggaaagtctttttcttgca
ggaatatcacctaatagacttgtaaaaatttatcaattgtag
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