Entamoeba histolytica: EHI_080270
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Entry
EHI_080270 CDS
T00238
Symbol
293.t00010
Name
(RefSeq) 5'-3' exonuclease domain containing protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ehi
Entamoeba histolytica
Pathway
ehi03008
Ribosome biogenesis in eukaryotes
ehi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ehi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
EHI_080270 (293.t00010)
09123 Folding, sorting and degradation
03018 RNA degradation
EHI_080270 (293.t00010)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ehi03021
]
EHI_080270 (293.t00010)
03019 Messenger RNA biogenesis [BR:
ehi03019
]
EHI_080270 (293.t00010)
03009 Ribosome biogenesis [BR:
ehi03009
]
EHI_080270 (293.t00010)
03016 Transfer RNA biogenesis [BR:
ehi03016
]
EHI_080270 (293.t00010)
Transcription machinery [BR:
ehi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
EHI_080270 (293.t00010)
Messenger RNA biogenesis [BR:
ehi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
EHI_080270 (293.t00010)
Ribosome biogenesis [BR:
ehi03009
]
Eukaryotic type
Pre-60S particles
RNases
EHI_080270 (293.t00010)
Transfer RNA biogenesis [BR:
ehi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
EHI_080270 (293.t00010)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
BRO1
Motif
Other DBs
NCBI-GeneID:
3403818
NCBI-ProteinID:
XP_649521
UniProt:
C4M8Y2
LinkDB
All DBs
AA seq
628 aa
AA seq
DB search
MGVPSLYRWLCKTVPNLSRKAKEQFDIDLTRNNPNGREFDNLYIDVNGLIHSSIDKQTIE
EVIEHIQNQLMRIIMIVRPRNLLYIAIDGVCPIAKMIQQRKRRFTTDCLEGNAITPGTEL
MEKISVGIESFILNQMNNKGLDYWRRIKVIVSGVHVPGEGEHKIIEYIRSQERINESHVI
YGEDADLLLLSLVLHYDSIFILRKDTRQIFDKNKKGSKPARNGTGKSKVMKDKIKKVENE
KIEKEKKELKKVFGSDDDEFLIPFEFANISLISKKLLELSSQYENSIERLELENDFIYLM
SIAGNDFLPNIEGIDIYAGALNTVLNIYFQLHSKGIKITENGKVNNNGVLAFFTELAQHE
QRLIESQMKTRRGSAQPICGFINIDTNKIIKLGQSGYKERYVQTYFMNKEEYIKDSVKSY
LEGMNWVFNYYCGNAFSWKWGYKCHYAPLLCHFVDYFQPVEFTTIAEDDGPIHPIEQLIA
VLPPKSIHLIPKQLQEIYNLPEFKKTIPEQVIIDAHGQDVSYKGIALVGFPDISLIHQYV
ESHIKELNKLEVIRNQLSQEVLFVYNKIPNFSTIIQPTTIDIKHNEIKGILKEMKYSLHS
FYYPVQHGVTKELQNDLIFGYYFIHSLQ
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccttcattatatcgttggttatgtaaaacagttcctaatctttcaagaaag
gctaaagaacaatttgatattgacttaacacgtaataatccaaatggaagagaatttgat
aatttatatattgatgttaacgggttaatacatagttctattgataaacaaacgattgaa
gaagttatagaacatatacaaaatcaattaatgagaattattatgatagttagacctaga
aatttactttatattgctattgatggagtatgtcctattgcaaaaatgattcaacaaaga
aagagaagatttactactgattgtcttgaaggaaatgctattactccaggaactgaactt
atggaaaaaattagtgttggaattgagtcatttattttaaatcaaatgaacaataaagga
ttagattattggagaagaattaaagttattgtttctggtgttcatgttccaggagaagga
gaacataaaattattgaatatataagaagtcaagaacgaataaatgaaagtcatgttatt
tatggagaagatgcagaccttttattgttaagtttagttcttcattatgactcaatattt
atattaaggaaagacacaagacaaatatttgataaaaataaaaaaggaagtaaaccagca
agaaatggaacaggaaaaagtaaagtaatgaaagataaaataaaaaaagttgaaaatgaa
aaaattgaaaaagaaaaaaaagaattaaaaaaagtctttggaagtgatgatgatgagttt
ttaattccttttgagtttgctaatatctctcttattagtaaaaagttattagagttatct
agtcaatatgaaaattcgattgaaagattagaattagaaaatgattttatttatttaatg
tcaatcgctggaaatgattttcttccaaatattgaaggaattgatatttatgcgggagca
ttaaacacagtactaaacatttatttccaattacattcaaaaggaattaaaattacagaa
aacggaaaagttaataataatggtgttcttgcattttttacagaattagcacaacacgaa
caaagactaatagagagtcaaatgaaaactagaagaggttctgctcaaccaatttgtggt
tttattaatattgatacaaataaaataattaaattaggacagtcaggatacaaagaacgt
tatgttcaaacatattttatgaataaagaagaatatattaaagatagtgttaaaagttat
ttagaaggaatgaattgggtctttaattattactgtggtaatgctttttcatggaaatgg
ggttataaatgtcattatgcaccattattgtgtcatttcgttgactattttcaaccagta
gaatttactacaatagcagaagatgatggtccaattcatcctatagaacaactcattgct
gttttacctcctaaaagcattcatcttataccaaaacaacttcaagaaatatataacctt
ccagaattcaaaaaaactattccagaacaagtgattattgatgcacatggacaagatgtc
tcttataaaggaatagcattagttggattcccagatatatctcttattcatcaatatgta
gaaagccatatcaaagaattaaataaacttgaagtaataagaaatcaactttctcaagaa
gtattgtttgtttataataaaataccaaatttcagtacaattatacaacctacaacaatt
gacattaaacataatgaaataaaaggaatcttaaaagaaatgaaatattctttgcattca
ttttactatccagttcaacatggagtaacaaaagaattacaaaatgatttgatatttggg
tattattttattcattcgcttcaataa
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