Entamoeba histolytica: EHI_093360
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Entry
EHI_093360 CDS
T00238
Symbol
22.t00005
Name
(RefSeq) 5'-3' exonuclease domain containing protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ehi
Entamoeba histolytica
Pathway
ehi03008
Ribosome biogenesis in eukaryotes
ehi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ehi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
EHI_093360 (22.t00005)
09123 Folding, sorting and degradation
03018 RNA degradation
EHI_093360 (22.t00005)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ehi03021
]
EHI_093360 (22.t00005)
03019 Messenger RNA biogenesis [BR:
ehi03019
]
EHI_093360 (22.t00005)
03009 Ribosome biogenesis [BR:
ehi03009
]
EHI_093360 (22.t00005)
03016 Transfer RNA biogenesis [BR:
ehi03016
]
EHI_093360 (22.t00005)
Transcription machinery [BR:
ehi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
EHI_093360 (22.t00005)
Messenger RNA biogenesis [BR:
ehi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
EHI_093360 (22.t00005)
Ribosome biogenesis [BR:
ehi03009
]
Eukaryotic type
Pre-60S particles
RNases
EHI_093360 (22.t00005)
Transfer RNA biogenesis [BR:
ehi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
EHI_093360 (22.t00005)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
Seadorna_VP2
Motif
Other DBs
NCBI-GeneID:
3410158
NCBI-ProteinID:
XP_655833
UniProt:
C4MB93
LinkDB
All DBs
AA seq
666 aa
AA seq
DB search
MGVPSLFAWVRQICPGYVKRLPPKIQGEEKREKNEIGEEYDNLYIDFNGIIHQCSHSEKE
EEATSEEEIMERIFKAMDRYVNYVRPRKMIFIGVDGVCPVAKIIQQRKRRYCSVLNNTGG
FDSNCITPGTKFMEKIGIALHGYIVNRMDNDLYWSGLKVILSDSKVAGEGEHKIYEFIRK
EIKKNERFKEERHCIYGMDGDLIILTLGINIRNMTILREEQEIIKKNNKCDICGKKHKTK
DHGKETKLIMCYPNELRKWLINEAKKNLIETKKEEGEEYKEEDIEIIEEEIIKDFILISF
LVGNDFLPRIPSIKIQTGGMEMLLKNYWKLYVKGKRLSKGTEINITNFKELFKMIGEEES
NILKGIIQNTKKDKEVKEYDQNIYFDSSKEIKLNKEGYHDRYYQIHFNTTNIEFIQNIVH
HYFEGISWIFNYYLNTLPSWRWYYKFHYAPFALDFALYLNENDSISFSSDTPILPLEQLL
AVLPPQSFINLPSKLAHFVLSPTSPILHYFNTSFKIDINGENKLYKGVPLLPDIDINLLH
SFVFNLEHSLPPSELKRNILLPFNILYVTKNSSLPLFSKIQSLYPSNSSLIFSLNSSLSS
SLNSSLISSLSSLPSLPFISSSFSLSLFPLFNLDFFISPKLHYLMFSNHSIITLTNRHVS
NAFFSN
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccaagtttatttgcatgggtaagacaaatatgtcctggatatgttaaaaga
ctaccaccgaagattcaaggagaagagaaaagagagaagaatgagataggggaagaatat
gataatttatatatagattttaatgggataatacaccaatgctcacattccgaaaaagaa
gaagaagctacaagtgaagaagaaatcatggaaaggatatttaaagcaatggacagatat
gtcaattatgtaagaccaagaaaaatgatatttataggagtagatggagtatgtccagta
gctaaaattattcaacaaagaaaaagaagatattgttcagtacttaataatacaggagga
tttgattctaattgtataacaccaggaactaaatttatggaaaaaataggaattgcactt
catggatatattgttaatagaatggataatgatttatattggtcaggacttaaagtaata
ttaagtgatagtaaagtagcaggagaaggagaacataaaatatatgaatttattagaaaa
gaaataaaaaagaatgaaagatttaaagaagaacgacattgtatttatggaatggatgga
gatttaattattttaacattaggaattaatattagaaatatgacaattttaagagaagaa
caagaaataataaaaaaaaataataaatgtgatatttgtggaaagaaacataaaacaaaa
gatcatggaaaagaaacgaaattaattatgtgttatcctaatgaattaagaaaatggctt
attaatgaagctaaaaaaaatcttatagaaacaaaaaaagaagaaggagaagaatataaa
gaagaagatattgaaataatagaagaagaaattattaaagattttatattaatttcattt
ctagttggaaatgattttcttccaagaattccatcaattaaaattcaaacaggaggaatg
gaaatgttattaaaaaattattggaaattatatgttaaaggaaaaagactaagtaaagga
acagaaattaatattacaaattttaaagaattatttaaaatgataggagaagaagaatca
aatattttaaaaggaattattcaaaatacaaaaaaagataaagaagttaaagaatatgat
caaaatatttattttgattcatcaaaagaaataaaattaaataaagaaggttatcatgat
cgttattatcaaattcattttaatactacaaatattgaatttattcaaaatattgttcat
cattattttgaaggtatttcttggatttttaattattatcttaatacacttcctagttgg
agatggtattataaatttcattatgctccttttgctttagattttgctttatatcttaat
gaaaatgattctatttctttttcttctgatactcctattcttcctttagaacaacttctt
gctgttcttcctcctcaatcttttattaatctcccttctaaactcgctcattttgttctt
tctcctacttctcctattcttcattattttaacacttctttcaaaattgatattaatgga
gaaaataaactttataaaggagttcctcttcttcctgacattgacattaatcttcttcat
tcttttgttttcaatcttgaacattctcttcctccttcagaattaaaaagaaatattctt
cttccttttaatattctctacgtcactaaaaactcttctcttcctctcttctcaaaaata
caatctttatatccttctaactcgtctctcatcttctctcttaattcttctctttcttct
tctcttaattcttctcttatctcctctctatcttctctcccttctcttcctttcatctcc
tcttcattctctctctccctcttccctctttttaatctagacttcttcatctctccaaaa
cttcattatctgatgttctcaaatcattcaattatcactttaactaatcgtcacgtctct
aacgctttcttctctaattaa
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