Entamoeba histolytica: EHI_132400
Help
Entry
EHI_132400 CDS
T00238
Symbol
297.t00006
Name
(RefSeq) 5'-3' exonuclease domain containing protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ehi
Entamoeba histolytica
Pathway
ehi03008
Ribosome biogenesis in eukaryotes
ehi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ehi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
EHI_132400 (297.t00006)
09123 Folding, sorting and degradation
03018 RNA degradation
EHI_132400 (297.t00006)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ehi03021
]
EHI_132400 (297.t00006)
03019 Messenger RNA biogenesis [BR:
ehi03019
]
EHI_132400 (297.t00006)
03009 Ribosome biogenesis [BR:
ehi03009
]
EHI_132400 (297.t00006)
03016 Transfer RNA biogenesis [BR:
ehi03016
]
EHI_132400 (297.t00006)
Transcription machinery [BR:
ehi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
EHI_132400 (297.t00006)
Messenger RNA biogenesis [BR:
ehi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
EHI_132400 (297.t00006)
Ribosome biogenesis [BR:
ehi03009
]
Eukaryotic type
Pre-60S particles
RNases
EHI_132400 (297.t00006)
Transfer RNA biogenesis [BR:
ehi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
EHI_132400 (297.t00006)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
3403787
NCBI-ProteinID:
XP_649490
UniProt:
C4M8Q3
LinkDB
All DBs
AA seq
779 aa
AA seq
DB search
MGVPSFFAWLTKKYVSITNDCKKNSSIENDDLLSPNPNGVEYDNFYIDLNGLIHPCYHPT
DRQTPETNVDVFVLLTRYIDYMVDIVRPRKLLYIAIDGVAPRAKMNQQRSRRFKTAQNMV
NQSFEEKKSVFKEKPIDSNCITPGTEFMEAVSKVIKAYIKERMNSSKYWNSIIVIFSDSS
VPGEGEHKIIDFIRRQKDCKNYNPYIRHCMYGLDADLIMLALATHERYFSIIRDKPYNKG
DKCYICGEYHSSDSCKNYNRVAPLDPITKPFIFVDCHVLRQYLNNTIKVEKYDFERCLDD
FIFFCFLVGNDFLPHIPSLDIQEGAIDILIKIYLKFLPENGYITENGTINFKIVKRFLHL
VGKEEKQLLVNRRLRKEKEDQLYFDKKMRELDYQIQSAFENRTEALPQRKTEIKVKSIKE
VELAKEESQLIRESLEKKKQEVVRQMEELKHDEIQLGEQGYEERYYQQKFHVDYKKEKNN
IIEIVDSYVEGLNWVFSYYYEGCQSWDWYYPYYYAPFAKDIGKLLDPEFEVQYTQGKPFR
PFEQLMSVLPPQSKHCLPKEFQQLMNSTSSPLSSFYPEDFKIDMNGERSFYKAIALIGFI
NQKKLLNVVEPIEKELGKKDQQRNSRYGNTFIFIGKSNWYYRKDIHHFKKIGKEAWKQLK
KEIKTYISNDQVVPIKTYKPLHIESNYTKHQFGGLIIPIRGMDLGKDKSKCYMLGYIPPQ
YKNGHIFKTRYIGEPLESPQELDSMKAKSQPLRKSIKRQRDIREYRLVPLTPDNSEKKK
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccttcattctttgcctggcttacaaaaaaatatgtcagcattaccaatgac
tgtaagaaaaacagttctatagaaaatgatgacttgttatctccaaaccctaatggagtt
gagtatgataatttttatattgatttgaacgggttaattcatccttgttatcaccctact
gatagacaaacaccagaaacaaatgttgatgtatttgttttattaactcggtatattgat
tatatggtagacatagttagaccaagaaaacttttatacatagcaattgatggtgttgct
ccacgtgctaaaatgaaccagcaacgaagtcgtagatttaaaacagcacaaaatatggta
aaccaaagttttgaagaaaaaaaaagtgtttttaaagaaaaaccaattgattctaattgt
ataactcctggaactgaatttatggaggctgttagtaaagttattaaagcctatattaag
gaaagaatgaattcatctaaatattggaatagtattattgttatatttagtgattcaagt
gttccaggagaaggagaacataaaattattgattttataagaagacaaaaggattgtaaa
aattataatccatatataagacattgtatgtatgggttggatgcagatttgattatgtta
gcattagcaactcatgaaaggtattttagtattatcagagataagccatataataaagga
gataagtgttatatttgtggtgaatatcattcttcggatagttgcaaaaattataataga
gtagcaccattagacccaatcacaaaaccatttatttttgttgattgtcatgttcttaga
caatatttaaataatacaattaaagtagaaaaatatgattttgaacgttgtttagatgat
tttattttcttctgtttcttagttgggaatgatttcttacctcatatcccttctctagac
attcaagaaggagcaattgacattttgattaaaatctatcttaaatttcttccagaaaat
ggctatattaccgaaaatggaactattaattttaagatagttaaaaggttccttcatctt
gtagggaaagaagagaagcaacttttggttaacagaagactaagaaaagaaaaagaagat
caactttattttgacaaaaagatgagagaattagattatcaaattcaatctgcttttgaa
aatcgaactgaagcattacctcaacgtaaaactgaaattaaagtaaagagtataaaagag
gtggagttagcaaaagaagagtctcaattgattagagaaagtcttgagaaaaagaaacaa
gaagtagttcgccaaatggaagagttaaagcatgatgaaatacaattaggagaacaagga
tacgaagaaagatattaccaacaaaaatttcatgtagattataagaaagaaaaaaataat
attatagaaattgttgattcatatgttgaaggactaaattgggtatttagttattattac
gaagggtgtcaatcatgggattggtattatccttattactatgctccttttgctaaagat
attggtaaattacttgatccggaatttgaagtacaatatacacaaggaaaaccttttagg
ccatttgaacaattaatgtcagtcttaccacctcaatcaaaacattgccttccaaaagaa
tttcaacaattaatgaattcaacttcttctccattaagtagtttctatcctgaagatttt
aaaattgatatgaatggagaaagatcattttataaagctattgcactgattggatttatt
aatcaaaagaaattattgaatgttgttgagccaattgaaaaagaattaggaaaaaaagat
caacaaaggaattctagatatggaaatacttttattttcataggtaaatcaaattggtat
tacagaaaagatattcatcatttcaagaaaataggtaaagaagcatggaaacaattaaaa
aaagaaattaaaacatatatttcaaatgaccaagttgttccaatcaaaacatataaacca
ttacatattgaaagtaattatacaaaacatcaatttggtggattaattattccaatacgt
ggaatggatttaggaaaagataaaagtaaatgttatatgttaggttatattccacctcaa
tataaaaatggacatatctttaaaactagatacattggagaaccattagaatcacctcaa
gaattagactctatgaaagctaaatctcaaccattaagaaagtctattaaacgccaacga
gatataagagaatatagactagttcctttaactccagataattctgagaagaaaaaataa
DBGET
integrated database retrieval system
