Entamoeba histolytica: EHI_134610
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Entry
EHI_134610 CDS
T00238
Symbol
131.t00001
Name
(RefSeq) DEAD/DEAH box helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ehi
Entamoeba histolytica
Pathway
ehi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ehi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHI_134610 (131.t00001)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ehi03019
]
EHI_134610 (131.t00001)
03041 Spliceosome [BR:
ehi03041
]
EHI_134610 (131.t00001)
03009 Ribosome biogenesis [BR:
ehi03009
]
EHI_134610 (131.t00001)
03016 Transfer RNA biogenesis [BR:
ehi03016
]
EHI_134610 (131.t00001)
Enzymes [BR:
ehi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EHI_134610 (131.t00001)
Messenger RNA biogenesis [BR:
ehi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
EHI_134610 (131.t00001)
Spliceosome [BR:
ehi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
EHI_134610 (131.t00001)
Complex C
U4/U6.U5 tri-SnRNP related factors
EHI_134610 (131.t00001)
Ribosome biogenesis [BR:
ehi03009
]
Eukaryotic type
Pre-60S particles
Helicases
EHI_134610 (131.t00001)
Transfer RNA biogenesis [BR:
ehi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
EHI_134610 (131.t00001)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
ATPase_2
nSTAND3
AAA_16
TFB6
BBS2_hp
YicC-like_C
YodE
Motif
Other DBs
NCBI-GeneID:
3406428
NCBI-ProteinID:
XP_652111
UniProt:
C4M010
LinkDB
All DBs
AA seq
977 aa
AA seq
DB search
MTSNVDDMFDFLQPETQNKDEAKEEEEINEYLMKRRKIIEDKYKDLLPRPESTPILEAQY
QGCTHEVAVPDGQVATEQTLNPQYPTEPAKTYPFTLDDFQRLSVSCIGQNESVLVSAHTS
AGKTAVAEYAIASALKNNQRVIYTSPIKALSNQKYRDLQEQFTDVGLITGDITINEEASC
LVMTTEILRNMLYRGNDVMREVAWVIFDEVHYMRDKERGVVWEESIILLPDTVHYVFLSA
TIPNAFEFASWIANIHKQACHVVYTDYRPTPLCHYLFPAGGNGIYLVVDKECKFREEGFN
KALTSLGLDAVGIKTTSKQMNNKPDVIKIITMVMKNNLAPVIVFSFNRKELEVMAKTCNR
MDLTSDDEKTIIAKIFNNAIQCLNAEDRKLEQITELLPLLLKGVGMHHSGLLPIMKETVE
ILFQEGLIKCLFATETFAMGLNMPARTVVFTNVKKYDGKETRYLRPGEYIQMSGRAGRRG
KDDQGTVILMVDQKIEPTVLKNMIFGKADPLTSSFYLGYNMLLNLMKLEAADPEGLISKS
FRQFQTNNKLPELQKKLKELEEKEKTYIFTQEDIVKPLYHLKLAIDQHNENIHEAIYKES
VLLPFLVDGRLVHIVDKNTLFDFGWVPVLADRKRKVGTVSVIVSLKKGALQPTPGELGKG
GNAGITSFNIDCISEVSTLRLGLPDNVRDNLDTFLFKINNAIKKKYPDFNLPVLDPINDM
KINDQNVIESIKKIKELKERWNQVQWDDITRKEFDMFVERENIREEISVLRSTVVQSKDV
ILKDELRGMRRVLKRLGYVSEDDIIQTKGRVAAELSAGNELLLTELLFSGVFSTLNAKQA
TALLGCFVLDEKPKEQVQPPKDLEESFALIITNATRIANIMADCRLNINVNKYIEQFRPT
MLPIVESWCDGMTFAQLIQGSDLFEGSIIRGMRRLEELLVQMTDASKFMGNPDLAKKFEE
GVTLIKRDIIFAASLYI
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgacttctaatgtcgatgatatgtttgactttcttcaaccagaaactcaaaataaagat
gaggctaaagaagaagaagaaattaatgaatatctaatgaaacgaagaaaaattattgaa
gataaatacaaagatttattaccaagaccagagtctacacctattcttgaagcacaatac
caaggatgtactcatgaagttgcagtcccagatggacaagtagcaacagaacaaactcta
aatccacaatatccaacagaaccagctaaaacatatccatttacattagatgattttcaa
agactttcagtatcatgtattggtcaaaatgaaagtgttttagttagtgcacacacttca
gcaggaaagactgcagttgcagaatatgcaattgctagtgcattaaaaaataatcaaaga
gtaatttatacatcacctattaaagcattatctaatcaaaaatatagagaccttcaagag
caattcacagatgttggattaataactggagatattactattaatgaagaagcatcatgt
cttgttatgacaacagaaattcttagaaatatgttatatagagggaatgatgttatgaga
gaagtagcatgggttatatttgatgaagttcattatatgagagataaagaacgaggagtt
gtttgggaagaatcaattattttattaccagatactgtacattatgtatttttatctgca
acaataccaaatgcatttgaatttgcaagttggatagccaatattcataaacaagcatgt
catgttgtttatacagactacagaccaactccattatgtcattatctttttccagcagga
ggaaatggaatttatttagttgttgataaagaatgtaaatttagagaagaaggatttaat
aaagcattaacttcacttggacttgatgcagttgggattaaaacaacatcaaaacaaatg
aataataaacctgatgttattaaaattataacaatggttatgaaaaataatcttgcacca
gttatagtcttttcatttaatagaaaagaacttgaagtaatggcaaaaacatgtaataga
atggatttaacttcagacgatgaaaaaactataattgcaaaaatctttaataatgctatt
caatgtttaaatgcagaagataggaaattagaacaaataacagaacttcttccattatta
ttaaaaggagtaggaatgcatcattcaggattattacctataatgaaagaaacagttgaa
atattattccaagaaggattaataaaatgtttatttgcaacagaaacatttgctatggga
ttaaatatgccagcaagaactgttgtatttactaatgtaaaaaaatatgatggaaaagaa
acgagatatcttagaccaggagagtatattcaaatgagtggaagagctggaagaagagga
aaagatgatcaaggaacagttattttaatggtagatcaaaaaatagaaccaacagtatta
aaaaatatgatttttggaaaagcagatccattaacatcatcattttatttaggatataat
atgcttttaaatttaatgaaactagaagcagcagatccagaaggattaatttctaaatca
tttagacaattccaaacaaataataaattacctgaattacaaaagaagttaaaagaatta
gaagaaaaagaaaaaacatatattttcacacaagaagatattgttaaaccattatatcat
cttaaattagctattgaccaacataatgaaaatattcatgaagctatttataaagaatca
gttttattaccatttttagttgatggaaggttagttcatattgtagataaaaatacgtta
tttgattttggttgggtacctgtgttagcagatagaaaaagaaaagttgggacagttagt
gttattgtttcattaaagaaaggagcattacaaccaactccaggagaattaggaaaagga
ggaaatgcaggaattacatcatttaatattgattgtatttcagaagtatctacattaaga
ttaggattaccagataatgttagagacaatttagacacatttttatttaaaattaataat
gcaattaaaaagaaatatccagactttaacttacctgtattagatcctattaatgatatg
aaaattaatgatcaaaatgttatagaatcaataaaaaaaattaaagaattaaaagaaaga
tggaatcaagttcaatgggatgatattactagaaaagaatttgatatgtttgttgaaaga
gaaaatattcgagaagaaattagtgtattaaggtctactgttgttcaatcaaaagatgtt
atattaaaagatgaattaagaggaatgagaagagtattaaaaagattaggatatgttagt
gaagatgatatcattcaaactaaaggaagagttgctgctgaactttctgctggaaatgaa
ttattattaacagaattattatttagtggagtatttagtacattaaatgcaaaacaagca
actgctttattaggatgttttgtattagatgaaaaaccaaaagaacaagttcaacctcca
aaagatttagaagaaagttttgctcttattattactaatgccacacgtattgcaaatatt
atggcagattgtcgattgaatattaatgttaataagtatattgaacaattcagaccaaca
atgttaccaattgttgagtcatggtgtgatggaatgacttttgctcaactaattcaagga
agtgatttatttgaaggaagtattattcgtggaatgagaagattagaagaacttttagtt
caaatgactgatgcaagtaaatttatgggaaatccagacttagcaaagaagtttgaagaa
ggggttacattgattaagagagatattatttttgctgcttctctttatatttga
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