KEGG   Entamoeba histolytica: EHI_167150
Entry
EHI_167150        CDS       T00238                                 
Symbol
44.t00003
Name
(RefSeq) Replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
ehi  Entamoeba histolytica
Pathway
ehi03030  DNA replication
ehi03410  Base excision repair
ehi03420  Nucleotide excision repair
ehi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ehi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    EHI_167150 (44.t00003)
   03410 Base excision repair
    EHI_167150 (44.t00003)
   03420 Nucleotide excision repair
    EHI_167150 (44.t00003)
   03430 Mismatch repair
    EHI_167150 (44.t00003)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ehi03032]
    EHI_167150 (44.t00003)
   03036 Chromosome and associated proteins [BR:ehi03036]
    EHI_167150 (44.t00003)
   03400 DNA repair and recombination proteins [BR:ehi03400]
    EHI_167150 (44.t00003)
DNA replication proteins [BR:ehi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    EHI_167150 (44.t00003)
  DNA Replication Termination Factors
   ELG1-RFC complex
    EHI_167150 (44.t00003)
Chromosome and associated proteins [BR:ehi03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    EHI_167150 (44.t00003)
DNA repair and recombination proteins [BR:ehi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     EHI_167150 (44.t00003)
  Check point factors
   HRAD17(Rad24)-RFC complex
    EHI_167150 (44.t00003)
SSDB
Motif
Pfam: AAA Rep_fac_C DNA_pol3_delta2 AAA_22 RCF1-5-like_lid AAA_14 Mg_chelatase Rad17 RuvB_N ResIII AAA_24 AAA_11 AAA_16 Viral_helicase1 AAA_19 DO-GTPase1 T2SSE AAA_30 bpMoxR AAA_2 nSTAND3 AAA_28 AAA_7 AAA_5 AAA_25 ATPase_2
Other DBs
NCBI-GeneID: 3409096
NCBI-ProteinID: XP_654775
UniProt: C4LYB5
LinkDB
AA seq 329 aa
MSGQNAWSEKYRPKTLDDVQGQEEVIKLLKSSLNSGLPNLLFFGPPGSGKTTSILAVAHE
LFQGYFKERVLELNASNQRGIEMVRTTLKNYAMQDVTHYDGTPDYKLIILDESDALTPDA
QTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEG
FSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTPQDISNVAGVVPSKEITEIIHL
CQNGSVNDLYLKAMSLVVEQNFSADSILSQLRDVYIEDCVNLTNQERCLFLQLIAQSDAT
LIDKTDPLFTICALLCSLFKFYHKLTLSP
NT seq 990 nt   +upstreamnt  +downstreamnt
atgagcggacaaaatgcatggtctgagaaatatcgtccaaaaacacttgatgatgttcaa
ggacaagaagaagtgatcaagttacttaaatcttcactgaatagtggattaccaaattta
ttattttttggacctcctggaagtggaaaaactacttcaatacttgctgttgcacacgaa
ctatttcagggatattttaaagaacgtgtattagaattaaatgcttctaatcaaagaggt
attgagatggttagaacgactttaaaaaattatgctatgcaagatgttactcattacgat
ggaactcctgattataaattaattattttagatgaatcagatgcacttaccccagatgca
caaactgcattaagaagaatgatggaagattttacaaaaaatactcgattttgtttaatt
tgtaattacatcagtcgtattttaccaccaatttcatctagatgtattaaattcagattt
agtgcattaccaaaagaaatagtatcaaataggttacaaatgatttgtgaaaaagaagga
ttttctgttacaaatgaagctattcaagctgtttctatattgagtgaaggtgatttacgt
tatggaattggattacttcaaaaattatcacaaggtataaatcattctgtaacaccacaa
gacatttctaatgttgcaggtgttgttccttcaaaagaaatcactgaaataattcattta
tgtcaaaatggaagtgtaaatgatttatatttaaaggcaatgtcattagttgttgaacaa
aacttttcagctgattctattctttcacaactgagagatgtttatattgaagactgtgtt
aacttaactaatcaagaacgatgtttattcttacagttaatagcacagtctgatgctact
ttaatagataaaacagaccctttgtttactatctgtgcattattatgttcattatttaag
ttttatcacaaattaacattaagtccatag

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