Ehrlichia sp. JZT12: K6025_05245
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Entry
K6025_05245 CDS
T10635
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ehj Ehrlichia sp. JZT12
Pathway
ehj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ehj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K6025_05245 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ehj03400
]
K6025_05245 (mfd)
Enzymes [BR:
ehj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K6025_05245 (mfd)
DNA repair and recombination proteins [BR:
ehj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K6025_05245 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
MFD_D3
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WDM85221
LinkDB
All DBs
Position
1354558..1357947
Genome browser
AA seq
1129 aa
AA seq
DB search
MNSTNKIFYIPHIFEPLIIIKMYVKRLIHSAMYIVKEETQLNDLASIFKFYIPELEVITF
PAWDSIPYKKNSPNNSIMADRIKNLYSLTTISSDIPYIIILTKNALTQKVLPKNVILKAV
LKITLQQRISINYIVDYLNTHGYNQHSIVQDIGEFAINDSIIDIFPITHTNPIRISIYNN
SVQSINYFNCKTQLIDTNSSLENILIYPTSEVIKQTENIDYFCKTYKTKINQDHNLLDAI
VSRKKYIGEENFLPLFYKEELQSIFSYTQNITLIFNHKTIKEIEQHNNQIYLNYKTQLSY
QVTPSQLYIDFENFKIITRKLDKIIFSESNNDILNLADIYTDIQNFPSNTITTIQQVPDF
KSLAQKRQLDIFEILAEYIKTTCYKKKLIIACYSTGSLEYIQNKLKIFNIQLYKINTHKE
ICSPYNITILPMDHGFTTGSTTVITEHDLLHKQDTICKNNISNIIGEDIDLNIGDIVIHK
DYGIGKIAELETIKVLDSYHDFIKIEYYNNDKLFLPVENINLITKYGQQNTNITLDKLGS
TSWQQRQTKLKNHIKKIAKELLAVEAARRLSIGQSFSPDKSYQDFCNEFAYTETEDQLQA
IKDVEHDLLSGKIMNRLICGDVGFGKTEVALRAAFLVASKNYQVAIIVPTTLLCRQHFIV
FTERFKKFPNIKIRQLSKIIERSEAKQIKESLSCGQIQIIIGTHAILSQEVSFFNLSLLI
IDEEQQFGVKQKELLKKIKTNVHVISLTATPIPRTLHMALCGIKDLSLIKTPPKNRLPVT
SYTINYNETIIKEAIIKEYNRGGRIFYVCPQINNIKDISNNLARLVPEIKVSIAHGQLPT
SKLDTIMNDFFDGKFTILLTTSIIECGLDIPFANTIIIHNADMFGLAQLYQLKGRVGRSS
IKGYAYFILSEKANHKSETKLEIIQSIDSINSGFTLSLHDMDIRGFGNLVGEEQSGNIKD
IGIELYQQMLEEELNFYNQDSKDLYHVNINININIRIPEHYIKDIGLRMRVYKRIGSLRT
KEDIDNYHIELINKFGKLPDEVENLLNTIYIKQLCATIGICEVEQVKNTIYFKMHSNVNL
AKEVLDYLMSNPLIFKIQSNGISMLISNSSYCIISFIVHHLKKIISLLH
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtactaataagattttttacataccacatatatttgaaccactcattatcata
aaaatgtatgtaaaaagacttatccattctgcaatgtatatcgtaaaagaagaaacacaa
ctaaatgatttagcatccatattcaagttttacattccagagctcgaagttattacattt
cctgcatgggactcaattccatataaaaaaaattctcctaataactcaataatggcagac
agaattaaaaatctatattctttaactactataagcagtgatattccatacattattatt
ttaacaaaaaatgcacttacccaaaaagtattacctaaaaatgtaatattaaaagcagta
ctaaaaataacattacaacagaggatttcaataaattatatagtagattatttaaatact
catggatataaccaacattcaatagtacaagatataggtgaatttgctataaatgatagc
ataatcgacatatttcctataactcacacaaatcctataagaatttccatatacaacaat
tctgtacaatcaataaactattttaactgtaaaacacagttaatagatactaattcttct
ttagagaatatattaatctaccctacatctgaagtaataaaacaaacagaaaatatagat
tatttttgtaaaacctataaaacaaaaattaatcaagatcataatttattagatgcaata
gtttctagaaagaagtatataggtgaagaaaattttttacccctattctataaagaagaa
ttacaaagtattttcagctatacacaaaatatcacattgatattcaaccataaaactatt
aaagaaatagaacaacataataatcaaatatatttaaattacaaaactcagctatcttac
caagtaactcctagtcaactttacatagattttgaaaattttaaaattataactagaaag
cttgataagattatattttctgaatccaataatgatatacttaacttagcagatatttat
acagatatacaaaacttcccttccaataccatcacaacaatacagcaagttccagacttt
aaaagtctagcacaaaaaagacaactcgatatatttgaaatcttagcagaatatatcaaa
actacatgttataaaaaaaagctgataatagcttgctactctacaggttctttggaatac
atccaaaataagcttaaaatatttaatatacaactatataaaataaacacccacaaagaa
atctgctccccatataatatcactatattaccaatggatcatggctttacaacaggatcc
actacagtaataacagaacatgatttactacacaaacaagatactatatgtaaaaacaat
atttcaaatattattggcgaagatattgatctaaacatcggtgatatagtaatacataag
gattatggtattggaaaaatagcagaactcgaaactattaaagtactcgacagttaccat
gattttataaagatagaatactataataatgataaactattcttacctgtcgaaaatatt
aaccttattactaaatatggacaacaaaacaccaacattacattagacaagttaggtagt
acatcatggcaacaacgtcaaaccaagttaaaaaatcatataaagaaaattgcaaaagaa
ttattagcagtagaagcagcaagaagattatctattggtcaatctttttccccagataaa
agttatcaagacttctgcaatgaatttgcttacactgaaacagaagatcaattacaagcg
attaaagatgtagaacatgatctattgagtggaaaaataatgaatagacttatttgcgga
gatgttggctttggtaaaacagaagtagcattacgtgcagcatttttagtagcgagcaaa
aattaccaagtagcaattatagtcccaacaactctactatgcagacaacactttattgtt
tttacagaaagatttaaaaaatttcctaatataaaaattaggcaactatctaaaattatc
gaaagatctgaagcgaaacaaataaaggaaagtttatcatgtggtcaaatacagattata
ataggaacacatgctatactatcacaagaagtcagtttttttaatttaagcttactaatt
atagatgaagaacagcaattcggggtaaaacaaaaagagttacttaaaaaaattaaaaca
aatgttcatgttatttctttaactgcaactccaataccacgcacattgcatatggcgtta
tgcggaataaaggacttaagcttaattaaaacacctccaaaaaacaggttaccagttaca
agctacactatcaattataatgaaactattataaaagaagccataatcaaagaatacaac
agagggggcagaatattttatgtttgtccacaaattaacaacataaaagatatcagcaat
aacctagcaagattagtaccagagattaaagttagtattgcccatggccaacttccaact
agtaaacttgacacaatcatgaatgacttttttgatggtaaatttacaatactacttact
acatcaatcatagagtgcgggttagacattccttttgctaatactatcataatacacaat
gcagacatgtttggcttagcacaactctatcaattaaaaggtagagtaggccgcagcagt
ataaaaggttatgcatacttcatactatcagaaaaagcaaatcataaatccgagacaaaa
ctagaaatcatacaatcaatagattctatcaactctggattcactttatcacttcatgac
atggacatcagaggatttggcaatttagtaggagaagaacaatcaggaaatataaaagac
ataggaattgaattataccagcaaatgttagaagaagaactcaacttttacaatcaagat
tctaaagatctatatcatgttaatattaacatcaatattaacatcaggattcctgaacat
tatataaaagatataggattaagaatgagagtatacaaaagaataggtagtcttagaaca
aaagaagacatagataattatcatatagagctaattaataagtttggtaagttaccagat
gaagtagaaaacttattgaatactatatatattaaacaactatgtgcaactattggtata
tgcgaagtagaacaagtaaaaaatacaatttacttcaaaatgcacagtaacgtaaacctt
gcaaaagaagttttagattatttaatgagcaatcctttaatctttaaaatacaaagtaac
ggtatatcaatgctaatcagtaatagttcctattgcataataagttttatagtacatcat
ttaaaaaaaataatctctttactacactaa
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