Enterobacter hormaechei CAV1176: AB284_16760
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Entry
AB284_16760 CDS
T04593
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ehm
Enterobacter hormaechei CAV1176
Pathway
ehm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ehm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB284_16760 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ehm03019
]
AB284_16760 (rne)
03009 Ribosome biogenesis [BR:
ehm03009
]
AB284_16760 (rne)
Enzymes [BR:
ehm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AB284_16760 (rne)
Messenger RNA biogenesis [BR:
ehm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB284_16760 (rne)
Ribosome biogenesis [BR:
ehm03009
]
Prokaryotic type
rRNA processing factors
AB284_16760 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ANS18210
LinkDB
All DBs
Position
3301111..3304227
Genome browser
AA seq
1038 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIARENFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIEARQGGVRCIIVPNDEMQ
TPHYHVLRVRKGEETSTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPE
ATLEKPAAKPAVQKAAPAAPKAQPEQPGLLSRIFGALKKMFAGEEVQPEQPKEAPKEAKP
ERQQDRRKRQNNRRDRNDRNDRSDRNERRDNRSENNEGREQREDNRRNRREKQQQNVEDR
EIRQQAGDESEKSKQRDEQQPRRERNRRRNDEKRQAQQEVKNLNREAPVEQQDTEQEERT
QVMPRRKQRQLTQKVRVGAVQTEENDVIAVEAAESTTGTQVAKVDLPAVVENQVEQDESS
ENRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKVWIRY
PVARPEQAVEEQAVTEEVIAPVAAVEDVVTEAATVVEPQVVDTVAPQAVEVETTHPEVIA
APVDAAPQIIAEEDTVVAEEVAEEAEPVSAAEEPADVTVETVTEEVVQDVEIQVEPVVEE
VKEAEVKSEPVEVVAAPAPAHVATAPMTRAPAPEYVPEAPRHSDWVRPAFNFEGKGAAGG
HSATHMATAPATRPQPVE
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggcaaaatcacccgcattgaaccaagccttgaagctgcatttgtcgattac
ggtgctgagcgtcacggtttccttcctctcaaagaaatcgcccgcgaaaattttcctgca
aactacaactcccatggccgtccgaacattaaagatgttctgcgtgaaggtcaggaagtt
atcgtccagatcgataaagaagagcgtggcaacaaaggtgccgcactgaccacctttatc
agcctggcaggaagctatctggtattgatgccaaacaacccgcgtgcgggtggcatctct
cgccgtatcgaaggcgatgaccgtaccgagctgaaagaagcgctggcaagtctcgagctg
ccagacggcatgggccttatcgtgcgcaccgcaggcgtcggcaaatctgccgaagcgttg
cagtgggacctgagcttccgtctgaagcactgggaagccatcaagaaagcggctgagagc
cgtcctgctccgttcctgatccaccaggaaagcaacgttattgtgcgtgccttccgtgat
tatctacgtcaggacatcggtgaaattctgattgataacccgaaagtgcttgagctggct
cgccagcacatcgccgcgctgggtcgcccggatttcaccagcaaaattaaactgtacacc
ggtgaaatcccgctgttcagccactatcagattgaatcccagatcgagtctgccttccag
cgtgaagtgcgtctgccgtccggcggttctatcgtaattgataccaccgaagcgctgacc
gctatcgacatcaactccgcgcgtgcaacccgtggcggcgacatcgaagagaccgccttc
aacaccaaccttgaagccgctgatgaaatcgcccgccagctccgcctgcgcgacctgggt
ggtctgattgttatcgacttcatcgacatgaccccggttcgccatcagcgtgcggttgaa
aaccgtctgcgtgaagcggtgcgccaggatcgcgcacgtatccagattagccatatctcg
cgcttcggcctgctggaaatgtcccgtcagcgtctgagcccgtcactcggcgagtccagc
catcacgtctgcccgcgctgttccggtacgggtaccgtgcgtgacaatgaatcgctctcc
ctctctattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaggttcac
gccatcgttccggtgccgattgcctcctacctgctgaacgaaaaacgtgcagcggtaagc
gcaatcgaagcgcgtcagggcggcgttcgctgcatcatcgtgccaaacgacgagatgcaa
accccgcactatcacgtgctgcgcgtgcgtaaaggcgaagagacaagcaccctcagctac
ctgctaccgaagctgcatgaagaagaaatggcgctgccatcggatgaagagcctgccgag
cgtaaactgcctgagcagcctgcattagcaaccttcatcatgccggaagccccgccggaa
gcgacgctggaaaaaccagcggcaaaacctgccgtgcaaaaggcggcccctgccgcgcca
aaagcgcagcctgagcagccgggtctcctgagccgcatcttcggcgcgctgaaaaaaatg
tttgctggcgaagaagttcagcctgagcagccgaaagaagcgccaaaagaagcgaaacca
gagcgtcagcaggaccgtcgtaagcgtcagaacaatcgtcgcgatcgtaatgaccgcaac
gaccgtagcgatcgtaacgagcgccgtgataatcgttccgagaacaacgaaggtcgtgaa
caacgcgaggacaaccgtcgcaaccgtcgcgagaagcaacagcagaacgttgaagatcgt
gaaattcgccagcaggcgggcgatgagtccgagaagagcaaacagcgtgacgagcagcaa
cctcgccgcgagcgtaaccgtcgtcgtaacgacgagaaacgccaggcccagcaggaagtc
aaaaacctgaaccgcgaagcgcctgttgaacagcaggacacggagcaggaagagcgtact
caggttatgccgcgtcgtaagcagcgtcagctgacccagaaagtacgtgtgggtgctgtt
cagacggaagaaaacgacgttatcgcggttgaagcagcagaaagcacaacgggtacccag
gtcgcgaaagttgacctgcccgccgtagtggaaaatcaggttgagcaggacgaaagcagc
gaaaaccgtgacaacgcaggtatgccgcgtcgctcccgtcgttctccgcgtcacctgcgc
gtgagcggccagcgtcgtcgtcgctaccgtgacgagcgttacccgactcagtcgccaatg
ccgctgaccgtggcgtgcgcgtcacctgagatggcatccggtaaagtctggatccgttat
ccggttgctcgcccggagcaggctgttgaagaacaggctgtgaccgaagaggtgattgca
ccggtagcagcggtggaagacgtcgtgactgaagcagcaaccgtggttgaaccgcaggtt
gttgacacggtggcaccgcaggctgtggaagttgaaacgacccatcctgaagtcattgct
gcgccggttgatgccgccccgcagatcattgccgaagaagataccgtggtggctgaagaa
gtcgcggaggaagctgagccggtctccgcagcagaagaacccgcagacgttaccgtcgaa
acggtgacggaagaggttgttcaggacgtcgagattcaggttgagcctgttgtcgaagag
gtcaaagaggctgaagtgaaatccgagccggttgaggtcgttgccgctccagcgcctgct
cacgttgctaccgcgccgatgactcgcgccccggcacctgagtatgtacctgaagcgcca
cgccatagcgactgggttcgtccggcattcaacttcgaaggcaaaggtgctgccggtggt
cacagtgcaacgcacatggctactgcgccagcgacccgtcctcagcctgttgaataa
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