Enterobacter hormaechei CAV1176: AB284_22940
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Entry
AB284_22940 CDS
T04593
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ehm
Enterobacter hormaechei CAV1176
Pathway
ehm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ehm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB284_22940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ehm03019
]
AB284_22940
03016 Transfer RNA biogenesis [BR:
ehm03016
]
AB284_22940
Enzymes [BR:
ehm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AB284_22940
Messenger RNA biogenesis [BR:
ehm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB284_22940
Transfer RNA biogenesis [BR:
ehm03016
]
Prokaryotic type
tRNA degradation factors
AB284_22940
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
ANS19354
UniProt:
A0A6G4MQY3
LinkDB
All DBs
Position
complement(4620183..4622624)
Genome browser
AA seq
813 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFIIEHLTKREKPANREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPKA
VEDQIENLREEVPEESKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPHTPLDNEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKTLDQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPTTEAVTSFRSVLAELGLELPGGNKPEPRDYAELLESISDRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAHEQGHKGNTTETG
GYHYSMDEMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDDRKI
DFSLISSERAPRNVGKTEREKAKKGGNGKAGGKRRQAGKRVNFEPDSAFRGEKKQKPKAA
KKDARKAKKPSTKTQKIAAATKAKRAAKKQQAE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagccgaaaaatacgcgaatcctatccccagc
cgcgagttcatcattgaacacttaacaaaacgcgaaaaacccgccaatcgtgaagaactt
gccgttgaactgaacattgaaggtgaagagcaaattgaagcccttcgccgccgcctgcgc
gccatggaacgtgacgggcaacttgtctttactcgtcgccagtgctacgcgctgccagaa
cgcctcgacctgctgaaaggcaccgttattggtcatcgcgatggcttcggcttcctgcgc
gtggaaggccgtaaagacgacctgtacctctcatccgaacagatgaagatgtgtattcac
ggcgaccagatcctggcgcagccgctgggtgcagaccgtaaaggccgccgcgaagcgcgc
gtggtccgcgtgctggtgccgaaaaccagccagattgtgggccgttactttaccgatgcg
ggcgtaggctttgtggtgccggatgacagccgtctgagcttcgacattctcatcccgcct
gaagaggtgatgggcgcacgcatgggctttgtggtggtggtggaactcacccagcgccca
acccgtcgcaccaaagcggtgggtaaaatcgtcgaagtgctgggcgataacatgggcacc
ggcatggccgtcgatatggcgctgcgtacccatgaaattccgtatgtctggccgaaagcg
gttgaagatcagattgaaaacctgcgtgaagaagtgccggaagagtccaaagcaggccgc
gtggatctgcgcgatctgccgctggtcaccattgatggtgaagacgcccgtgacttcgat
gatgccgtatattgcgagaaaaaacgcggtggcggctggcgtctgtgggtggctatcgcg
gatgtgagctattacgtgcgtccgcacacgccgctggataacgaagcgcgcagccgcggt
acgtcggtctacttcccgtcgcaggttgtaccgatgctgccagaagtgctctccaacggc
ctgtgttccctcaacccgcaggtggaccgcctgtgtatggtctgcgaaatgaccatctcc
agcaagggacgtctgacgggctataagttctacgaagcggtgatgagttctcatgcgcgc
ctgacctataccaaggtctggcatatgttgcagggcgatcaggatcttcgcgaacagtac
gcgccgctggtcaaacacatcgaagagctgcacaacctctacaaaacgctggatcaggcg
cgcgaagagcgcggtgggatctcgtttgagagtgaagaggcgaagtttatctttaacgct
gagcgtcgtatcgagcgtatcgaacagactcagcgtaacgatgcgcacaagctgattgaa
gagtgtatgatcctggcgaacatctcggcggcacgtttcgttgagaaagccaaagagcct
gcgctgttccgtattcacgacaagccaaccacggaggccgtaacctcgttccgctccgtg
ctggctgaactcggcctggagctgcctggcggtaataagcctgagccacgcgattacgcc
gagctgctggaatccatcagcgatcgtcctgacgcggaaatgctgcaaaccatgctgctg
cgctccatgaagcaggcgatttacgatcctgaaaaccggggccactttggtctggcgtta
cagtcgtacgcgcactttacctcgccgatccgccgttatccggatctgtccctgcaccgt
gcgatcaagtatctgctggcgcacgagcagggtcataaaggcaacacgaccgaaaccgga
gggtatcactactccatggacgagatgttgcaactgggccagcattgttccatgaccgag
cgtcgtgcggatgaagcgacgcgcgacgtggcggactggctgaagtgtgactttatgctg
gatcaggtgggtaacgtctttaaaggcgtgattgccagcgtcaccggctttggcttcttc
gtgcgtctggatgagctgtttatcgacggtctggtgcacgtttccagcctcgataacgat
tactaccgcttcgaccaggtcggacaacgtctgatcggcgaatccggcggccagacctac
cgtctgggcgatcgggtggaagtgaaggttgaagccgtgaatatggacgaccgtaaaatc
gacttcagcctcatctccagcgagcgtgctccgcgtaacgtcggcaaaaccgagcgtgag
aaagcgaaaaaaggcggtaacggtaaagcgggcggtaagcgacgtcaggcaggtaaaaga
gtaaactttgagccagacagtgctttccgtggcgagaagaaacagaagcccaaggcggcg
aaaaaagacgctcgtaaagcgaaaaaaccgtcgaccaagacccaaaaaatagcggccgcg
accaaagcgaagcgcgcggcgaagaaacagcaggcggagtaa
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