Eubacterium hominis: H9Q80_06460
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Entry
H9Q80_06460 CDS
T08599
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ehn
Eubacterium hominis
Pathway
ehn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ehn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H9Q80_06460 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ehn03400
]
H9Q80_06460 (mfd)
Enzymes [BR:
ehn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9Q80_06460 (mfd)
DNA repair and recombination proteins [BR:
ehn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H9Q80_06460 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
Glyco_hydro_115
UB2H
Motif
Other DBs
NCBI-ProteinID:
QNM13586
UniProt:
A0A7G9GS04
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All DBs
Position
1281343..1284792
Genome browser
AA seq
1149 aa
AA seq
DB search
MDILLRELKDNDALQSILHKQSNLGNLSLSEEALLLAAAFKEQPKNLFVIKNNTYTAQKL
YERLTTLLEDDVLLFVMEDSLRVEAIAASPESKANQMESMAAMMDGKPRIVVLNTAAAIR
YMPSPEVFQQHFISLKTDQEIEYDDLKALLFEAGYTYVNRVDQPLCYAARGGIIDVYSMN
YEHPLRIEFFDNIIDSIRFFDISTQRTIEVIKEAHIVPASDLLFTDKEIACITERVNEEL
SKQETQLHESYRETLKNRIDEDLDAISNRMPEARLYRYYAYLDEHATIFDYMLKAWIIVS
SKEEVKEANKHILEENIAYLQELFQEGQALYKFQVFEELNKVLAKHQTIEFNMFVDYKKP
VSSQIMTMALGDINLERTMKEIITESRKRRVLLCLDDKEIPQVEKILNEENIAYRKVKEQ
DTLEEGISILCKKMVEGFTCLKENISVYTSKELFHTIKKASRFSNKFKEAEVLHDYQELN
VGDYVVHNQHGIGRYMGIINKVMDGVHKDFLHIVYKGDAELLVPLEQFRLIRKFVSKEGA
SPKLNKLGSNDWEKTKKKVSEKIAELADRLIHLYANRDENIGFAFSKDTPMQEQFEKDFP
YELTVDQDIAVREIKKDMESHKPMDRLLCGDVGFGKTEVAARAAFKAVVDNKQVAFLCPT
TILSLQHYKTFIKRFENFPVTIAVINRFITPADQRKILEGLKEGTIDILIGTHRLLSKDV
VYKDLGLLVIDEEQRFGVEHKEKIKELKNSVDVLSLSATPIPRTLQMSLIGIRSLSQLET
PPLNRMPVQTYVIEKNFSMIKEIIQRELARNGQVFYLYNNVKEIYNVAAKLREALPDIEV
GVAHGKMERDDIEDVMMQFTDNKYQVLVCTTIIETGIDIPNANTILIEDADHFGLSQLYQ
IKGRVGRSDRLAYAYLMYSPDKQLSEIAMKRLKSIKEFTQLGSGYKIAMRDLTIRGAGDM
LGPQQAGFIDTVGIDMYIEMLNSAIMEKKGIKKEVKPVMKKANVKVDAYIPHEFANEDYE
KITLYQRMDAITTKKELLDMQEEIKDNYGKLPKAVQLLFEKKRLDILLNEPHVENITEEQ
KFVNVTFTSAWSTRIDGVKLFEMMTSISKDTRIRYVNSKISMKLPKTKDWLYKMVEILER
TDELVIKNA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atggatatcttattaagagaactaaaggataatgatgccttacaaagcattctgcataag
caaagcaatctgggcaatttatccttaagtgaggaagcattactattggctgcggctttc
aaagaacagcctaaaaatctgtttgtgatcaagaataatacttatacagcacaaaagctt
tacgagcgtttaaccaccctgctagaagacgatgtgctgcttttcgtcatggaagattct
ttacgtgtagaagcaattgcggcttcacctgaaagtaaagcaaatcagatggagtctatg
gcagcaatgatggatggaaaaccacgtattgtggtcttgaatacggcagccgctattcgc
tatatgccttctcctgaagtatttcaacagcatttcatctcattgaaaacagatcaggaa
attgaatacgatgatttaaaagcgttactgtttgaggcaggatacacctatgtcaatcgt
gtagatcagccattatgctatgccgcccgtggtggtatcattgatgtttattccatgaat
tatgaacatcctttgcgtatagaattctttgataatatcattgacagtattcgattcttt
gatatttctacacaaagaaccattgaggtcatcaaggaagcacatattgtaccagcaagt
gatctgttattcacagataaagaaattgcctgtatcacagaacgtgtaaatgaagaacta
tcaaaacaagaaacgcagctacatgaaagctatcgtgaaacattaaaaaatcgtatagat
gaagatttagatgccatcagtaatcgtatgccagaagcaagactatatcgttactatgca
tatttggatgaacatgcgacaatctttgattatatgctgaaagcttggatcattgtatcc
agtaaagaagaagtcaaagaagcaaataaacatattctggaagaaaatatcgcttatctt
caggaactgtttcaagaaggacaggcattatataaatttcaggtatttgaagaattaaat
aaagtacttgccaaacatcaaaccattgaatttaacatgtttgtggattataaaaaaccc
gtatcttcacaaatcatgacgatggctctgggggatatcaatttagagcgaacgatgaaa
gaaatcatcactgaatccagaaaacgtcgtgtattgttatgtctggatgataaagaaatc
ccacaggtagaaaagattctaaatgaagaaaacatcgcttatcgtaaggtaaaggaacag
gatacactggaagaaggtatttccattctttgtaagaagatggtagaaggttttacctgt
ctaaaagaaaatatcagtgtatataccagtaaagaactgtttcacacaataaaaaaagcc
agccgttttagtaataaatttaaagaagcggaagttttacacgattatcaagagttaaat
gttggcgactatgttgtacataatcagcatggtattggtcgctatatggggattatcaat
aaagtgatggatggtgtccataaagactttttacatatcgtatataaaggtgatgcggag
ctattggtaccacttgaacaattccgtttgattagaaagtttgtatccaaagaaggtgct
tcgccaaagctgaataagcttggcagcaatgattgggaaaagaccaagaaaaaggttagt
gaaaagattgcggaactggcagatcgtttgattcatctatatgctaaccgtgatgaaaat
atcggattcgctttcagtaaagatacccccatgcaggaacaatttgaaaaagatttccct
tatgaattgacagtagatcaagatattgctgttcgagaaataaaaaaggatatggaaagc
cataaaccaatggatcgtttattatgtggggatgttggatttggtaaaacagaagtcgca
gcacgtgcagcattcaaagcagttgtggataataaacaggtcgcattcttatgtccaaca
acaattttatctttacagcactataaaacctttatcaaacgatttgaaaatttccctgtc
acgatcgcagttatcaatcgatttatcacacctgcagatcaaagaaaaattttagaagga
ttaaaagagggaacgattgatatattgattggtacccatcgtctgttaagtaaagatgtt
gtttataaagacttaggacttttggttatcgatgaggaacagcgatttggtgtagaacat
aaagaaaaaatcaaagaattaaaaaacagtgtcgatgtattaagcctgagtgcaacgcca
attccaagaactctgcaaatgtctttgattggtattcgttccttatcacaactagaaaca
ccaccattaaatcgtatgccggtacagacttatgtcattgaaaagaacttctctatgatc
aaagaaatcatacaacgagaactggcaagaaatgggcaggtattctatttatacaacaat
gtaaaagaaatatataacgtagccgcaaaactaagagaagcgctgccggatattgaggtc
ggagttgcccatggaaagatggagcgagatgatatcgaagatgtcatgatgcagtttacg
gataataaatatcaggttttggtatgtacaactattattgaaactggtattgatattcca
aatgcaaatacgattttaatagaagatgccgatcattttggtttgagtcagttatatcag
atcaaaggccgagtaggccgaagtgatcgtctggcctatgcatatctgatgtattcacct
gataaacaattaagtgaaattgcgatgaaacgattaaaatctatcaaagaatttacacaa
ttgggcagtggatataaaattgccatgcgagatttgaccattcgtggtgctggtgatatg
ctgggacctcagcaggcaggatttattgatactgtaggtattgatatgtacattgaaatg
ttaaatagtgccatcatggaaaagaagggtattaaaaaagaagtaaaacctgtgatgaaa
aaagcaaatgtgaaagtagatgcgtatatcccacacgaatttgcgaatgaagattatgaa
aaaatcacattgtatcagcgtatggatgcgatcacaactaaaaaagagctgttggatatg
caggaagaaatcaaagataattatggaaaactgcctaaagcagtgcaattattatttgaa
aagaaacgtctggatatcttattgaatgaacctcatgtagaaaatattactgaggaacag
aagtttgttaatgtgacatttacgagtgcatggtctaccagaattgatggtgtaaaattg
tttgaaatgatgacatctatttcaaaagatacacgcattcgttatgtgaacagcaaaatt
tctatgaagctgcctaagacgaaagattggttatataagatggtagaaatcttagagcgt
acagatgaattagttataaaaaatgcataa
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