Edwardsiella hoshinae: A9798_06440
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Entry
A9798_06440 CDS
T04508
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
eho
Edwardsiella hoshinae
Pathway
eho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9798_06440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eho03019
]
A9798_06440
03009 Ribosome biogenesis [BR:
eho03009
]
A9798_06440
Enzymes [BR:
eho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A9798_06440
Messenger RNA biogenesis [BR:
eho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A9798_06440
Ribosome biogenesis [BR:
eho03009
]
Prokaryotic type
rRNA processing factors
A9798_06440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
potato_inhibit
Motif
Other DBs
NCBI-ProteinID:
AOV96629
LinkDB
All DBs
Position
complement(1445494..1448694)
Genome browser
AA seq
1066 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSAHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQIPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLA
LSILRLIEEEALKENTREVHAIVPVPVASYLLNEKRDAVSAIEKRQTDVRVIVVPNDQMQ
TPHYAVMRVRKGEETHTLSYKLPQLHEAEACSEEEVPAERKRPEQPALAAFSLDVTALPL
EESDSTPVSAAVRPSEPRVQPAAAARPGLFGRLMASLKGIFAGEAPQQEAAPASETASPR
EESRAPQERRARRQNPRRERGERTERGERGERTERGERQERGNRENREARDEQRRNRRQS
QPAQSAEAGSEQTREDQQQRREQRNERQRRRQEEKRQAQQEVKALDVAAQPDEEIAEESA
PAQRRQRRQLSQKVRIVDNAAIATSASDVSLEVIADENKAALPPVSAPVAENTPPTAAAP
ASEEENANRHENGMPRRSRRSPRHLRVSGQRRRRYRDERYPQQSPMPLTLAVYSPEMASG
KVWISYPVTPLSADNQDVEQRATVEGVASNASAPHATVDSAPQPAAVPSDVVISEAAATE
ALSESDAAIAAPQVAALSAPTAAVVETGVESHADEDVKSDDAQMAAREEAPAHAACAAAA
PTLAETIPPLAQAEAEAEAEAEAEASVTAHAQEMATHAQASVVVHAHGHASAPMTRAPAP
AYVAPLVVVSTWVRPVYDFQGRGAAGGAAATSQASAPATKPSMPQG
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaggagttgcgtgtcgcccttgtggat
ggccagcgactgtacgacctggatatcgaaagcccgggtcatgagcagaaaaaagcgaac
atttacaaaggtaaaatcacccgtattgaacccagtctagaagctgccttcgtcgattac
ggtgccgaaagacacggtttcctacccctaaaagagatcgcccgcgaatacttccctagc
aactactccgcccatggccgtcctaatatcaaagacgtgctgcgagaggggcaggaagtc
atcgtccaggtcgataaagaggagcgcggcaataaaggtgccgcgttgaccacctttatt
agcctggcgggtagctatctggtattgatgccgaataacccccgtgccggcggtatttct
cgtcgcatcgagggtgacgatcgcaccgaactgaaagaagcactctcgtcgctgcaaatc
cctgatggaatgggactcatcgtccgcaccgcgggcgtcggcaagtctgccgatgcgttg
cagtgggatctctcgttccgcctgaaacactgggacgccatcaagaaagccgcagagggt
cgcccggcaccgttcctgatccatcaggaaagcaacgtcatcgtgcgcgccttccgcgac
tacctgcgtccggatatcggcgagatcctgatcgacaacccgaagatcctcgatctggcc
aagcagcatatcgccgccctgggtcgcccagactttagcagcaagattaagctgtacacc
ggcgaaatcccgctgttcagccactatcaaatcgaatcgcagatcgagtccgccttccag
cgtgaggtgcgcctgccctccggcggctctatcgtcatcgacagcaccgaggcgttgacc
gccatcgacatcaactccgcgcgtgccacgcgcggcggtgatatcgaagagaccgctttt
aacactaacctggaagcggcggacgagatcgcccgtcagttgcgtctacgcgacctgggc
ggtctgatcgtcatcgacttcatcgacatgacgccggtgcgccaccaacgcgaggtagaa
aaccgcctgcgtgatgcggtgcgtcaagaccgcgcacgcatccagatcggtcgcatctcg
cgctttggcttgctggaaatgtcacgccagcgcctcagcccgtcactgggcgagtccagt
caccacgtctgtccgcgttgtaacggcaccggcaccgtgcgcgacaacgagtcactggcg
ctctccatcctgcgcctgatcgaagaagaagcgctgaaggagaacacccgcgaagtccat
gccatcgtaccggttccggtcgcctcctacttgctgaatgagaagcgtgacgccgtcagc
gccattgaaaagcgtcagaccgatgttcgggtgatcgtggtacctaacgaccagatgcag
acgccgcattacgccgtgatgcgtgtacgcaagggcgaagagacccataccctgagttat
aagttgccgcaactgcacgaagcagaagcctgtagtgaagaagaggtgccggccgagcgt
aaacgtccagagcaaccggcgctggctgcctttagcctggatgtcaccgcgctccccttg
gaagagagcgacagcacgccggtttccgccgcagtacgtccgagcgagccccgcgtccag
ccagccgccgcggcccgtccgggtctgttcggccgcctgatggcctcgttgaaagggatc
ttcgccggcgaggcaccgcagcaagaagccgctccggcttcagagacagcaagcccgcgt
gaagagagccgtgcaccgcaagagcgtcgcgcccgtcgtcagaatccgcgccgtgagcgt
ggcgagcgtacagagcgtggtgaacgcggtgagcgtacagaacgcggtgagcgtcaggag
cgtggcaatcgcgaaaatcgcgaggcgcgtgacgaacagcgtcgtaatcgccgtcagtca
caaccggcgcagagcgccgaggctggaagtgagcaaacacgcgaagatcagcagcaacgc
cgcgaacagcgtaacgagcgccaacgtcgtcgtcaggaagagaagcgtcaggcgcagcaa
gaggtcaaagcactggatgtcgccgcacagcccgatgaagagatcgcggaagagagcgcg
ccggcgcaacgtcgtcagcgtcgccaactgagccagaaagtccgtatcgtcgataatgcg
gcgattgcgaccagcgctagtgacgtatcacttgaggttattgccgacgagaataaagcc
gcgctaccgcctgttagcgccccggttgcggaaaacaccccgccaaccgccgccgcgccg
gccagcgaagaggagaacgctaaccgccatgagaatggcatgccgcgtcgctctcgtcgc
tcgccgcgtcacctgcgcgtcagcggtcagcgccgccgccgttaccgtgacgagcgttat
ccgcagcagtcaccgatgccgttaaccctggcggtctactcacccgagatggcctccggc
aaagtatggatcagctatccggtcaccccgcttagcgccgacaaccaggatgtggaacag
cgcgccactgtcgagggcgtcgcctccaacgcaagcgctccgcacgctaccgtcgacagc
gcgcctcagccagcagctgtgccgtctgacgttgtgatcagcgaagcggccgccaccgaa
gcactaagcgagtctgacgccgccatcgctgcaccgcaggtcgctgcgcttagcgcgcct
actgctgccgtcgttgagacaggcgtcgagagccatgccgatgaggatgtcaagagcgac
gatgcgcagatggccgcgcgcgaagaggctccggctcacgccgcctgcgccgcagccgcc
ccgacgttagccgagacgattccgccgctcgcacaagccgaagccgaagccgaagccgaa
gccgaagccgaagccagcgtaaccgcccacgcacaggaaatggcaacgcatgcacaagca
agtgtggtcgtccatgcccacggtcacgccagcgcaccgatgacccgagcaccggcgccg
gcctacgtcgccccgctcgtcgtcgtcagcacctgggtacgtccggtctatgacttccag
ggacgtggagcggctggtggtgcagccgcgaccagccaagcgagcgcaccggcgaccaag
ccatcgatgccacaaggctaa
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