Edwardsiella hoshinae: A9798_06615
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Entry
A9798_06615 CDS
T04508
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eho
Edwardsiella hoshinae
Pathway
eho03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A9798_06615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eho03400
]
A9798_06615
Enzymes [BR:
eho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A9798_06615
DNA repair and recombination proteins [BR:
eho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A9798_06615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
MFD_D3
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Mre11_DNA_bind
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AOV96662
UniProt:
A0A376DD17
LinkDB
All DBs
Position
complement(1485788..1489249)
Genome browser
AA seq
1153 aa
AA seq
DB search
MSEQYRLTLPERYPLPARAGDVRQLGQLSGSACALECAEIAARHPGAVMLVVPDMQTALR
LRDEIPQFSRQWVTTLADWETLPYDNFSPHQDIISARLSSLYHLPGMERGIIILPINTLM
QRVCPHSFLHSHALVMQKGQRLSRDTLRGQLEQAGYRSVDQVMEHGEFATRGALLDLFPM
GSDEPYRIDFFDDEIDSLRLFDVDSQRTLNDVERIDLLPAHEFPTDKHAIELFRSQWREH
FEVRRDAEHIYQQVSKGIWPAGIEYWQPLFFSQPLPTLFSYLPAGTLVLGLGDLHQAAER
FWQDIVQRHQSRGVDPMRPLLAPESLWMRVDELFAALKQWPRIQLTREVLSERAGHSNLH
YQPLPRLAVEAQSKKPLENLQRFLAQFDGSVVFSAESEGRRETLLELLARIQITPRLIAR
LEEAEPGGHYIMVGASEHGFINSPLGLALICESDLLGERVSRRRQDNRRTINTDTLIRNL
AELAPGQPVVHLEHGVGRYGGMTTLEAGGIKGEYLILSYAGDAKLYVPVSSLHLLSRYAG
GADESAPLHRLGGDAWTRARQKAAEKVRDVAAELLDIYAMRAAKAGFAFHHDREAYQLFC
QGFPFETTPDQEMAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVHNSKQVAV
LVPTTLLAQQHYDNFRDRFANWPVRIELISRFRSAKEQAQVLADTAEGKVDILIGTHKLL
QTDVLWKDLGLLIVDEEHRFGVRQKERIKALRADVDILTLTATPIPRTLNMAMSGMRDLS
IIATPPARRMAVKTFVREYDSLLVREAILRETLRGGQVYYLYNDVDSIQKAADRLATLVP
EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLA
QLHQLRGRVGRSYHQAYAYLLTPPPKAMTVDAQKRLEAIASLEDLGAGFALATHDLEIRG
AGELLGDDQSGQMASVGFSLYMELLESAVDALKAGREPSLEDLTSQQTEVELRMPTLLPE
EMIPDVGTRLSFYKRIASASDAEALADLRAELIDRFGPLPDAARNLLQCAALRQQAAALG
IRRIEGHDKGGFIEFSENNHVDPSYLIGLLQQQPGVFRLDGPSKLKFIRDLSERPVRLAF
ISQLLAAFAEHRL
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacaatatcgacttaccctgccagaacgctacccgttgccggcccgcgccggc
gatgtccgccaactgggccagctcagcggctcggcctgcgccttggaatgcgccgagatc
gccgcacgccatcccggggcggtgatgctggtggtgcccgacatgcagaccgcgctccgt
ctgcgcgacgagatcccccaatttagccgccagtgggtcaccaccctggccgactgggag
accctgccctacgacaacttctcaccgcaccaggacatcatctccgcccgtctctccagc
ctctaccatctgccggggatggagcgcggaatcatcatcctgccgatcaacaccctgatg
caacgcgtctgcccgcacagcttcctgcacagccatgccctggtgatgcaaaaggggcag
cgtctctcgcgtgacaccctacgcggccaattagaacaagccggctaccgcagtgtggat
caggtgatggagcatggcgagttcgccacccgtggcgccctgctcgacttgttcccgatg
ggcagcgatgaaccttaccgcatcgacttcttcgatgacgagatcgacagcctgcgtctg
ttcgacgtcgacagccaacgcaccttaaacgacgtcgagcgtatcgatctgctgccagca
cacgagttcccgaccgacaagcacgccatcgaactgttccgcagccagtggcgcgagcac
ttcgaggtacgtcgcgacgccgagcatatctatcagcaggttagcaaggggatctggccg
gcagggatcgagtattggcaaccattattcttcagccaaccgctgcccaccctgttcagc
tacctgcccgccggcaccctggtgttaggcctgggcgatctgcatcaggccgccgagcgt
ttctggcaagacatcgtgcagcgccaccagagccggggcgtcgatccgatgcgtcccctg
ctggcaccggaaagtctgtggatgcgggtcgacgagttatttgccgccctcaagcagtgg
ccacgcatccaactgacccgtgaggtgctcagcgagcgggccgggcacagcaatctgcac
taccaaccgctcccacgcctggcggtcgaggctcaaagcaagaagccgctggaaaacctg
caacgcttcctggcacagttcgacggcagcgtggtgttctccgccgagagcgaaggccgg
cgtgagaccctgctggagctgctggcgcgcattcagatcactccccggctgatcgcccgc
ttggaggaagccgaacccggcggtcactacatcatggtcggcgccagcgagcacggcttc
atcaacagcccgctggggctggcactgatctgcgaaagcgatctgctcggtgagcgcgtc
agccgacggcgccaagacaatcggcgcaccatcaataccgatactctgatccgcaaccta
gccgaattggcccccggccaaccggtggtgcatctggagcacggtgttggacgctacggc
ggcatgaccaccctggaggcgggcgggatcaagggcgaatacctgatcctcagttatgcc
ggcgatgccaagctctatgtaccggtctcttcgctgcatctgctaagccgctacgccggc
ggtgccgacgaaagcgcgcctctgcaccgcctggggggcgacgcctggacgcgtgcacgc
cagaaagcggcggagaaagtgcgtgatgtggccgccgagctgttggacatctacgccatg
cgcgccgccaaggcgggcttcgccttccaccacgaccgtgaagcctatcaactgttctgt
cagggcttcccgttcgaaaccacgccggatcaggagatggcgatcaatgcggtactcagt
gacatgtgccagccgctggcaatggatcgtctggtatgcggcgacgtcggtttcggcaag
acggaggtagcgatgcgcgccgccttcctggcggtgcataacagtaaacaggtggcagtg
ctggtgccgaccaccctgctggcgcaacagcattatgataacttccgcgaccgcttcgcc
aactggccggtgcgcatcgaattgatctcgcgcttccgcagcgccaaggaacaggcccag
gtgctggcggataccgccgagggcaaggtcgacatcctgatcggtacccataagctgcta
cagaccgatgtgctatggaaagatctggggctgctgatcgtcgacgaggaacaccgtttc
ggtgtgcgtcagaaggagcgtatcaaagcgctgcgcgccgacgtcgacatcctgaccctg
acggcgacgccgatcccgcgcaccctgaacatggcgatgagcggcatgcgcgatctctcc
atcatcgcaaccccgccggcgcgccgtatggcggtcaagaccttcgtgcgcgagtacgat
agcctgttggtgcgcgaagcgatcctgcgcgaaaccctacgtggcggtcaggtgtactac
ctgtataacgacgtcgactccatccagaaggccgccgatcggctggcgactctggtgccg
gaggcgcgcatcgccatcggccatggccagatgcgcgaacgcgaactggagcgggtgatg
aacgacttccaccaccagcgtttcaatgtgctggtgtgtaccaccatcattgagacgggt
atcgacatccccagcgccaacaccatcatcatcgagcgtgccgaccacttcggtctggcg
caattgcaccagttgcgcgggcgtgtaggccgctcttaccatcaggcctacgcctatctg
ctcaccccgccgccgaaagcgatgaccgtcgacgcccagaaacgtctggaggccatcgcc
tcactggaagatctcggtgccggtttcgccctggcaacgcacgatctggagatccgcggg
gccggcgagctgctgggagacgatcagagtggccagatggccagtgttggcttctcgctg
tatatggagttgctggagagcgccgtcgatgccctgaaggccgggcgcgaaccctcgctg
gaagatctgactagccaacagaccgaggtggagctacgcatgccgaccctgttgccggag
gagatgatccccgacgtcggcacccgcctctcgttctacaagcgcatcgccagcgccagc
gacgcggaggcgttggccgatctacgcgccgagctgatcgaccgcttcggcccgttgccc
gatgcggcacgcaacctgttacagtgcgccgcgctgcgtcaacaggcggcggcgttgggt
attcggcgcatcgaagggcatgacaagggaggcttcatcgagttcagcgagaacaaccac
gtcgacccgagctatctgatcggactgctgcaacagcagccaggggttttccgcctggat
ggccccagcaagctgaagtttatccgcgatctcagcgaacgtccggtgcggttagcgttc
atcagccaactgttggcggctttcgccgagcaccgcctctaa
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