Edwardsiella hoshinae: A9798_08820
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Entry
A9798_08820 CDS
T04508
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
eho
Edwardsiella hoshinae
Brite
KEGG Orthology (KO) [BR:
eho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
eho03016
]
A9798_08820
Enzymes [BR:
eho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A9798_08820
Transfer RNA biogenesis [BR:
eho03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
A9798_08820
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
PilZ
S1CSD-TOTE-2
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AOV98568
UniProt:
A0ABN4SZX4
LinkDB
All DBs
Position
2007615..2009558
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AA seq
647 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTDKGFGFLEVDAQKSYFIPPPQMKKVMHGDRV
RAAVQMDKEREIAEPEALIEPFLTRFVGRVQKKANEDRLSIIPDHPLLKDAIGCRPARGL
ERDFQQGDWVLAEMRRHPLKGDRNFFAEITAFITDGNDHFAPWWVTLTRHDLARQAPQWQ
AGEMLDEGLAREDLSALPFVTIDSASTEDMDDALYVAENADGSLKLTIAIADPTAYISAD
CPLDAEARQRAFTTYLPGFNIPMLPRDLSDDLCSLRAGQRRPVLACEVTIDSDGSLRDDI
RFFSGWIESKAKLVYDQVSDWLEGCGDWQPSDETIAEQIRLLHRVANARTAWRQQHALVF
RDRPDYRFILDENGDVRDIVAEPRRVANRIVEECMITANVCAALVLRERLGFGIYNTHTG
FDPALVEQAVSLLAANDVAANAEALLTLEGFCTLRRHLDSLPSTFLDSRIRRFQTFAEIS
TEPGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKALIANQPTTRPDAALTLQLAERRRQN
RLAERDVGDWLYARFLKDKVNAPTPFQAEIIDISRGGMRVRLLENGAVAFVPASFIHAVR
DELVCSQESGTIQVKGEVVFRQGDTVPVTLSEVRLDTRSLIARPFSA
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggacaacccgctgcttgcccagctaaaacagcaacttcactcgcaaaccccg
cgcgtagaaggcgtggtcaaggggaccgacaaaggctttggctttctggaggtcgacgcg
cagaaaagttatttcattccaccgccgcagatgaagaaggtcatgcacggtgaccgcgtg
cgtgccgccgtccagatggataaggagcgtgaaatcgccgaaccggaagcgctgatcgag
ccattcctgacccgtttcgtcggccgcgttcagaagaaggctaacgaggatcgcctgtcc
attatccccgaccatccattgctgaaagacgccatcggctgccgcccggcgcgcggcctg
gagcgcgatttccaacagggcgactgggtactggccgagatgcgccgccacccactgaag
ggcgatcgcaacttcttcgccgaaatcaccgccttcatcaccgacggtaatgaccatttc
gccccctggtgggtgacgttgacacgccacgatctggcgcgtcaggcaccgcaatggcaa
gccggcgagatgctggatgaggggctggcgcgggaggatttgtctgccctgcctttcgtc
accatcgacagcgccagcaccgaagatatggacgatgcgctgtacgtggcggaaaacgcc
gacggcagcctgaaactgaccatcgctatcgccgatccgaccgcctacatcagcgccgac
tgcccgctggacgccgaagcgcgtcagcgtgccttcaccacctacctgccgggcttcaac
attccgatgctgccgcgcgacctgtcggatgacctgtgttcgctgcgcgccggtcaacgc
cgtccggtgctggcctgcgaagtgaccatcgacagcgacggcagcctgcgcgacgacatc
cgcttctttagcggttggatcgaatccaaggccaagttggtttacgaccaagtttccgac
tggctggagggatgtggcgattggcaaccgagcgatgaaacaatcgccgagcagatccgc
ctgctgcaccgtgtcgccaacgcccgtaccgcctggcgccagcagcatgcgctggtgttc
cgcgatcgtcccgactaccgcttcatcctcgacgagaacggtgacgtgcgcgacatcgtc
gccgaaccgcgccgcgtcgccaaccgcatcgtcgaagagtgcatgatcaccgccaacgtc
tgcgcggcgctggtactgcgcgagcggctcggcttcggcatctacaacacccataccggc
ttcgatccggcgctggtcgaacaggcggtctcgctgctggctgctaacgacgtcgccgcc
aatgccgaggcgctgctgaccttggaaggcttctgcaccctgcgacgtcacctggattcg
ctgccgagcaccttcctggacagccgtatccgccgcttccaaaccttcgccgagatcagt
accgaaccggggccacacttcggtctagggttggaggcctacgccacctggacctcgccg
atccgtaagtatggcgatatggtcaaccatcgcctgctgaaggcgttgatcgccaaccaa
ccgacgacgcggccggatgcggcgctaacgctgcaactggccgagcgccgtcgccagaac
cgcctggctgagcgtgacgtcggcgattggctgtacgcccgcttcctgaaggacaaggtg
aacgctccgacgccattccaggcggagatcatcgacatctcccgtggcggcatgcgcgtg
cgtctgctggagaacggcgcggtggccttcgtccccgcctccttcatccatgcggtccgc
gacgagctggtctgtagccaagagagcggcaccatccaggtgaaaggcgaagtcgtcttc
cgccagggggacaccgtgccggtgacgctgagcgaggtccgtctcgacacccgcagcctg
atcgcacgcccattcagcgcctaa
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