Edwardsiella hoshinae: A9798_16165
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Entry
A9798_16165 CDS
T04508
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
eho
Edwardsiella hoshinae
Pathway
eho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9798_16165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eho03019
]
A9798_16165
03400 DNA repair and recombination proteins [BR:
eho03400
]
A9798_16165
Enzymes [BR:
eho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A9798_16165
Messenger RNA biogenesis [BR:
eho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A9798_16165
DNA repair and recombination proteins [BR:
eho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A9798_16165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AOV98328
UniProt:
A0ABM6EMV0
LinkDB
All DBs
Position
complement(3625561..3627402)
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AA seq
613 aa
AA seq
DB search
MGSSVATAAVIDSERLAERVLKDTFGYQQFRPGQRAIVEAAIAGRDCLVVMPTGGGKSLC
YQIPALVRDGLTIVVSPLISLMKDQVDQLQANGVNAACLNSTLSREQQQAVYAGCRSGEI
RLLYIAPERLMMDNLLDTLPQWHPTLLAVDEAHCISQWGHDFRPEYSALGQIKRRFPEMP
VIALTATADDATRQDILRLLDLRDPLVQVSSFDRPNIRYTLIEKFKPLDQLWHFVQSQRG
KSGIIYCNSRAKVEDTAARLQSRGLSVAAYHAGLENGRRTEVQEAFQRDDLQIVVATVAF
GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEALLFYDPADMAWLRRCLEEKP
EGTQKEIERHKLNAMNAFAEAQTCRRLVLLNYFGEGRQESCNNCDICLDPPKRYDGLVDA
QKALSTVARVGQRFGIGYVVEVLRGANSARIRELGHDKLSVYGIGREHTTEHWVSILRQL
IHLGLVTQNIALHSALQLTEAARPVLRGEVALPLAVPRVINLKARSSTQKSYAGNYDRKL
FAKLRKLRKAIADQENIPPYVVFNDTTLLEMAEQMPLRAGDLLSINGVGQRKLERFGAPF
MSLIREHLDEGEA
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggggagcagtgtggcaacggcagcggtgatcgattcagagaggctggctgagcgggta
ttgaaagataccttcggctatcagcaatttcgcccagggcagcgagcgatcgtcgaagca
gcgatcgcggggcgtgactgtctggtcgtcatgccgaccggagggggaaagtccctgtgt
tatcagatcccggcgttggtgcgggatggattgaccattgtcgtctcgcccttgatctcg
ttgatgaaggatcaggtcgatcagttgcaggcgaatggtgtcaatgccgcctgcttgaac
tcgacccttagccgtgagcagcagcaggcggtctacgccggttgtcgcagcggtgagatc
cgcctgttgtacattgcccctgaacgcctaatgatggataacttgctggacacattgcca
cagtggcaccctacgctgctggccgttgatgaggcacactgtatctcgcaatggggacat
gatttccgcccagagtacagtgcgttgggacagatcaaacgacgctttcctgagatgccg
gtgatcgccctgacggcgaccgccgacgacgcaacccgccaagatatcctacgcctgctc
gacttgcgcgatccgctggtgcaggtcagcagtttcgaccgacccaacatccgttatacc
ctgattgaaaagtttaagccgttggatcagttgtggcatttcgtgcagtcgcagcgaggg
aagtccggcatcatctattgtaacagccgcgccaaggtcgaagacaccgccgcacgtttg
cagagtcgcggtctgagcgtcgcggcctatcacgccggattggagaatgggcggcgtacc
gaggtacaagaggcgttccagcgcgacgatctacagattgtggtagcgacggtggcgttc
ggcatggggatcaataagccgaatgtgcgcttcgtggtgcatttcgacattccgcgcaat
atcgagtcctactatcaagagaccggacgtgccgggcgcgatggcttacccgccgaggcg
ttgctgttttacgatccggccgatatggcctggttacgccgctgcttggaggagaaaccg
gagggaacgcagaaagagatcgagcgccataagctaaatgcgatgaatgccttcgccgaa
gcgcagacctgccgtcgtttggtcctgctgaactatttcggtgaggggcgtcaggagagc
tgtaataactgcgatatctgcctggatccgcctaagcgttatgatggtctggtcgatgca
cagaaggcgctttctaccgtggcacgtgtcggacagcgtttcggtattggttatgtcgtc
gaggtcctgcgcggcgcgaacagcgcgcgcatccgcgagttagggcatgacaagctatcg
gtctatggtattggtcgtgaacataccaccgagcactgggtaagtattctacgccaactg
atccatctgggattagtgacgcagaacatcgccctgcattctgcgttgcaactgaccgag
gcggcacgcccggtgttgcgtggtgaggtggcattaccgctggcggtgccgcgcgtgatt
aacctgaaggcgcgtagcagcacacagaagagctatgcgggcaactacgaccgtaagctg
tttgccaagctacgcaagctgcgtaaggcgatcgccgaccaggaaaatatcccgccttat
gtggtctttaacgatacgaccttgttggagatggcggagcagatgccgctacgggcgggc
gatctgctcagtatcaacggtgtcggtcagcgtaagctggagcgctttggcgcgcccttt
atgtccttgatccgcgaacatcttgatgagggtgaggcataa
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