Enterococcus hirae: EHR_08380
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Entry
EHR_08380 CDS
T02160
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ehr
Enterococcus hirae
Pathway
ehr02020
Two-component system
ehr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ehr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
EHR_08380
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EHR_08380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ehr03021
]
EHR_08380
Transcription machinery [BR:
ehr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EHR_08380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_Tnp_4
HTH_17
HTH_23
HTH_3
LacI
MarR_2
HTH_IclR
HTH_Tnp_ISL3
Sigma70_r4_2
HTH_20
Fe_dep_repress
HTH_31
HTH_11
Motif
Other DBs
NCBI-ProteinID:
AFM70603
UniProt:
I6SD64
LinkDB
All DBs
Position
1658721..1660052
Genome browser
AA seq
443 aa
AA seq
DB search
MKFQQNFSQKQQQTQKLAMTQHLQQSIQVLQYNSEELLAFVENQALENPLIEVVEPEWQS
DYQKIRSANDNEETNYLNQIPDTSVSLFESLIEQIHLNYRQTFLRQLVLYLVEYIDLNGF
LTIDLKEAQEQTNATSIEILDALTLVQQLEPAGVGARSLQECLMLQTERDDFAPELAYIV
LEECFELLVNRKWKEIAQRFSIELSEVQRIFDYIQTLSPSPGRIFDRSSELYIIPDVKVM
VDKDQKVSVLSRRGNQPDVRFQEHYFNQMLKRADKETQAYLKERKQEFDWLKKTILQRGD
TILRVAQIIVSHQQAFFTNKERPIKPLTLKEVAKELEVHESTVSRAVNGKYLETEFGVFE
LKKFFTTRLQQSGTDTETDLSADTAQKKIQELVDQEDKIKPLSDQKIVELLKKDEILISR
RTVAKYRDLLGIPSSSKRKRYDR
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttcaacaaaacttttcacaaaaacaacagcaaacacaaaaattagccatgaca
caacatctgcaacagtccatccaggtattgcaatataacagtgaagagctcttggcattt
gttgaaaatcaagcattagaaaatccattgatagaagtagtggaaccagaatggcaatct
gactatcagaagatcagatcagccaatgataatgaagaaaccaactacttaaatcaaatt
cccgataccagtgtttccttatttgaatcattgatcgaacagatccatttgaactatcgg
cagaccttcttacgtcagttagttctttatttagtcgagtacattgatttaaatggattt
ttgacgattgatttaaaagaggcacaagaacaaacaaatgcaacttcgattgagatcctt
gatgcactgacgctggtccaacaacttgaaccagcaggtgtgggggcacgaagtttacaa
gagtgtttgatgttacaaacggaaagagatgactttgcaccagagttagcgtatatcgtt
ttggaagagtgttttgagttgctggttaatcgcaaatggaaagagatcgctcaacgcttt
tcaatcgaacttagtgaagtacaacgaatctttgattacatccaaacacttagcccaagc
cctggccgaatttttgatcgaagcagtgaattatatatcattcctgatgtcaaagtgatg
gttgataaggaccaaaaagtgtctgtcctctctagacgaggaaatcaaccagacgttcgt
ttccaagaacattattttaatcagatgcttaaaagagcagacaaagaaacgcaagcgtac
ttgaaagaacggaaacaagaatttgactggttgaaaaaaacgattctacaacgaggggat
acgattttacgggtggctcaaatcattgtttcccatcaacaagcctttttcacaaataaa
gaaagaccaattaaaccgctgacattaaaagaagtggcaaaagagttggaagtacatgaa
tccactgtcagccgtgccgtcaatggaaaatacctggaaactgaatttggggttttcgag
cttaagaaattctttacaactagactacagcaaagtgggacagatactgagaccgatctc
tcagctgatactgcacaaaagaaaatccaagaacttgtggatcaagaagacaaaatcaaa
ccactttctgatcaaaagatcgtagaattattaaaaaaagatgaaatattgatttcaaga
aggacggttgcaaaatatcgtgacctgctgggaatcccaagttcatcgaaaagaaaacgt
tatgatagataa
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