Eurypyga helias (sunbittern): 104503648
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Entry
104503648 CDS
T08356
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ehs
Eurypyga helias (sunbittern)
Pathway
ehs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ehs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104503648 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ehs03021
]
104503648 (PCF11)
03019 Messenger RNA biogenesis [BR:
ehs03019
]
104503648 (PCF11)
Transcription machinery [BR:
ehs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104503648 (PCF11)
Messenger RNA biogenesis [BR:
ehs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104503648 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
CID
SHOCT
DNA_pol3_a_NI
INCENP_ARK-bind
Motif
Other DBs
NCBI-GeneID:
104503648
NCBI-ProteinID:
XP_010148592
LinkDB
All DBs
Position
Unknown
AA seq
1636 aa
AA seq
DB search
MYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDDIFPLKKLYA
LDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESPTPTSAVTSGASTPPAVPEM
QKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQGSSTIASVPAPS
KQHMSPTPHMTVKPPHQTAVQSEKTKPSPSPPLHDTKIVNRDPRLNRMAQHSSHAKDQSH
RKEFSPNTTSQSDTKTNKTTQAEKQNLTKQEKVKTSEKTQKKELDQSESKSKSPSPLKNK
LPNTKDTKPQECESTKVSEISKRDPRLKKHLQDKSDGKEEEVKEKRRNAEKKEKEEHKTC
EHRPAGSRNKVINGAVQKQDTTTEESEKQPVKQGRSSRKRSRSRSPKARSPSTHSPKRRE
RRSPKRRLRSLSPTSSTPKTGKIRQVGPKQSHPEEGTQAARDERNSNKRSAKQEVRDPRR
VKKAQEDRPQESASQHSTKASPDPKENAENWQGSKSGKRWKSGWEENKNSQQSEEHQTLG
KSPHQRHRENWPAGKGVLSPRAPKQQHRLSVDANLQIPKELTSASKRELLKKANERLTSG
EITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTDEKCGLKKKPLLSDAELTYYEHKAKL
KRTQVQHSLSRLDLLDPDDILDYHLPDALLSGIECEQAKAKRGVQFDRKEPFGERSRRHS
PVSGTKRPFPDNLSPLESRRRLEEQNATKGARGSKNFDPYDSWGESDELRDALRQQGKST
TEFQKIDGDAICRFDNREERQLLGQAGVREEPRSPFSERFKRARYEDPEKAPFPESPGSR
FGGIEAKQRITALMEDRPLFDGSPRQAAARVGVDGQGSPFVDGPAAGSSSRIDGPPGQAA
MRFEGPLVGAAASQFDGPLAGAGGAGPLRFDGPPGQLAGALRFEGPPGQVGGGGPLRFEG
PLGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFDGPRGQPSGGLRFEGPHGQPLGPRGQP
GGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFEGPHGQPMGPHGPS
GGGLRFEGPHGPSGGGLRLEGPHGQPGVGPRLIDGPVHQGAGGLRFDGPLGRAGPRFDGC
HAAGFDGQPGQLALLQRFDGIHGQPGPRFERAPGQQAQARFDTALPQRFDGPHQPASRFD
LPLGLQGARFENVANHPASRLEMAPYGQGGPFVEHPSQGYNGPSHGMQFQRPDLFDGSPG
PNFSGPAGPGAQNFPLRAAGHYFDEKGLQGPQYGNFNNMPMGSGQVSLMSAQPGHYGQGQ
QYLPNPGSFLQNPAGALPHSYPDNHLGQVDVNELFAKLLKTGILKLSKTDSTSAQVNETS
AHPAAEEEDDDQNEDQNVPDLTNFVVEELRQRYDCVINRLYTGIQCYSCGMRFTTSQTDV
YADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEVV
LKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPS
CYEDYQKTSSFDCTPSPSKTPVENPLNIMLNIVKQETQESCDSPQVKEEPDDTPTACAEE
STPASADVKTEPEETL
NT seq
4911 nt
NT seq
+upstream
nt +downstream
nt
atgtaccttatggattccattgtcaagaatgtgggaagagaatatcttactgcatttact
aaaaacctagttgcaacatttatttgtgtatttgaaaaggtggatgaaaatactaggaaa
agtttatttaaattacgctccacatgggatgatatttttcctttgaagaaactgtatgca
cttgatgtcagagtcaactcattagatcctgcttggccaattaaacctctgcccccaaat
gtgaatacttctagcatccatgtgaatcctaagtttttaaataaatcgccagaggaatct
cctacacctacctctgctgtcacttctggtgcctctactcctccagctgttcctgaaatg
caaaagaatttgacacaggagcaactgatcaggcagcaattgcttgcaaagcaaaagcag
ttgttagaacttcagcaaaaaaaattagagctggagctggaacagactaaagcacagttg
gctgtatctctcagtgttcagcaagggtcatctacgatagcttccgttccagcaccttcc
aagcaacacatgtctcccacacctcatatgacagttaaaccacctcatcagactgctgtg
caatccgaaaaaaccaaaccatccccgagtcctccacttcatgataccaaaatagtaaat
agggatcctagacttaataggatggctcaacattcttctcatgctaaagatcaatctcat
aggaaagaattttcacctaacacaaccagtcagtctgataccaagacaaacaaaacaaca
caggctgaaaaacaaaacttgacaaagcaagaaaaagtgaaaacaagtgaaaaaacacag
aagaaagaacttgaccagtcagaatcaaaatctaaatcgccatcccctttaaaaaataag
ctacccaatactaaagatactaaaccccaggaatgtgaaagcacaaaagtatctgaaatt
agtaagcgggatccaagactgaagaagcatcttcaagataagtcagacggcaaagaggag
gaggtgaaggaaaagagaagaaatgcagagaagaaagaaaaagaggaacataagacatgt
gaacatagaccagcaggcagcagaaataaagtgattaacggtgctgttcagaaacaagac
acgactacagaggagtcagaaaaacagcctgtaaaacaagggagatcgagtagaaagcgg
tcacgatcacgctctcccaaggcacggtcaccatctacacattccccaaaaagacgagag
aggaggtcacccaaaagaagactgaggagtttatctcccacttcatcaactcctaaaact
ggaaagatacgtcaggtaggccctaagcagtctcatcctgaagagggcacgcaagcagca
agagatgaaagaaattctaataagagaagtgctaaacaagaggtgcgcgatccaaggaga
gtgaaaaaagctcaagaagacaggccccaagagtccgcaagccagcattctacaaaagct
tctcctgatccaaaggagaatgcagaaaactggcaaggatccaaatcaggaaagaggtgg
aaatctggttgggaagagaataaaaactctcagcagagtgaagaacaccagacgcttggt
aaatcccctcaccaaagacaccgggaaaactggcctgctggtaaaggagttctgtcgccc
cgagcaccaaagcagcagcaccggttaagtgtggatgctaatttacagattcccaaagaa
ttgacttctgcaagcaagagagaattacttaagaaggccaatgaacgcttaacatctggt
gaaataactcaagatgaattccttatggtagctcatcaaatccgacagctgttccagtat
caggaaggaaagcacagatgtaatgtctgggatagccctacagatgaaaagtgtggtttg
aaaaagaaacctcttttatcggatgcagaattaacatattatgaacataaggctaaacta
aaaagaacccaagttcagcattcattgtcaaggcttgatctgttggatcctgatgatatt
ttggattatcatttgcctgacgcattgctttctggaatagaatgtgagcaagcaaaagcc
aagcgtggagtacagtttgacagaaaagaaccgtttggagaaaggtcaaggagacactct
cctgtaagcggcactaagagaccttttcctgataacctctcaccgctcgagagtcggcga
agacttgaggaacaaaatgctactaaaggagcaagaggttctaagaactttgatccttac
gacagctggggagaatcagatgaattgagagatgctctcagacaacaggggaaaagcaca
acagagttccagaaaatagatggtgatgcaatctgcagatttgataatcgtgaagaaaga
cagctccttgggcaagctggtgttcgggaggaaccaagatcaccattcagtgaacgtttc
aaaagagctagatatgaagatccagagaaagcaccatttccagaaagtccaggatcaaga
tttggaggcattgaagcaaagcagaggataactgccctaatggaagacagacctctgttt
gatggctcacctagacaggctgctgcacgggttggggtagatggacaaggaagtcctttt
gttgatggtcccgctgctggttcaagttccagaattgatgggccacctggacaggctgcg
atgagatttgaggggcctttggtgggggcagctgcatcgcagtttgatggaccgctggca
ggagctgggggagcgggacccttaagatttgatgggccaccagggcagctggcaggggcc
ctgaggtttgaaggacccccaggacaggttggtggaggaggtccactgaggtttgaggga
cctcttgggcagataggtgggcctctgcggtttgaggggccagcagggcagcctgtaggt
ggtcctagatttgaaggacctggagttggtctcaggtttgacgggccccgtggtcagcct
tcaggtggtctcaggtttgaggggcctcatggtcaacctctggggcctcgaggtcaacca
gggggtggtctcaggtttgagggaccccatggtcagcccttggggcctcatggtcaacca
gggggtggcctcaggtttgaggggccacatctacagccactggggccccatggtcaacct
ggaggtggcctcagatttgagggaccacatggtcagcctatggggccacatggaccatca
ggcggtgggctcaggtttgaggggcctcatggaccatctggtggtgggctccgattagaa
ggaccccatgggcagccaggtgtaggtcctaggttgattgatggaccagtacatcaggga
gctggtggacttagatttgatggtcctcttggtcgggctggcccgagatttgatggttgt
catgcagctggatttgatggtcagcctggacagttggctctcttgcaaagatttgatgga
attcatggacagcctggtccaagattcgaaagggcgcctggccagcaggcacaagcacga
tttgatacagccttacctcaacgatttgatggacctcaccagccagcctctagatttgac
ttgccccttggccttcaaggtgcacgtttcgaaaatgtagccaaccatcctgcctcaaga
ctggaaatggcaccatatggacaaggtggtccgtttgtcgagcatcccagccagggctac
aatggaccatctcatgggatgcagttccagaggcctgatttatttgatggttcacctgga
ccaaatttcagtgggccagctggaccaggagcacagaatttcccactgagagcagccgga
cattactttgatgaaaagggtcttcagggtcctcagtatgggaacttcaataacatgccc
atgggaagcggtcaggtttctctcatgtctgctcaaccagggcattatggccaaggccaa
cagtatttgccaaatcctgggagttttcttcagaaccctgcaggagcccttccacattca
taccctgataaccaccttggacaggttgatgtcaacgaattgtttgctaaactgctgaaa
acagggatcctcaaactatcaaaaactgattcaacttcagcacaagtgaatgaaacatca
gcccatccagctgctgaagaggaagacgatgatcagaatgaggatcaaaatgtcccagac
ctcactaacttcgtggttgaagaacttagacagcgttatgattgtgttataaatcgactg
tacactggaatacagtgttactcatgtggaatgagattcactacgtcgcagacagacgtt
tatgcggatcatttggattggcattatcgtcagaaccggacagagaaagatgttagcaga
aaaattacacaccgaaggtggtactacagcttaacggactggattgaatttgaagaaata
gccgatctagaggagcgtgcaaaaagccagttttttgaaaaagctcacgaagaggtggtg
ctgaagacgcaagaagctgcaaaagagaaggagtttcagagtgtgcctgctggaccagct
ggggcagtggagagctgtgaaatttgccaagagcaatttgagcaatattgggatgaggaa
gaggaagagtggcacctgaagaatgccatcagagtagatgaaaagatttaccatccatct
tgctacgaagattaccaaaaaacgtcatcatttgactgcacgccatctcccagcaagact
cctgtagaaaacccactaaatataatgttgaacattgttaaacaagaaacacaggagtcc
tgtgactcgcctcaagtcaaagaagaacctgatgacacccccactgcctgtgcagaagag
agcacacctgcatctgcagatgttaaaacagaacctgaggagactctttga
DBGET
integrated database retrieval system
