Eurypyga helias (sunbittern): 104516323
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Entry
104516323 CDS
T08356
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ehs
Eurypyga helias (sunbittern)
Brite
KEGG Orthology (KO) [BR:
ehs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ehs03016
]
104516323 (RTCB)
Enzymes [BR:
ehs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
104516323 (RTCB)
Transfer RNA biogenesis [BR:
ehs03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104516323 (RTCB)
Prokaryotic type
tRNA splicing ligases
104516323 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
104516323
NCBI-ProteinID:
XP_010158919
LinkDB
All DBs
Position
Unknown
AA seq
447 aa
AA seq
DB search
AGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGF
DINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDW
SLREGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIY
NEYAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARI
ASAEGQDYLKGMAAAGNYAWGKRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKV
EQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQG
MTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNV
TDVVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1346 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggtggctttttgcctgcgatgaaacagattgggaatgtggctgcattacctggca
ttgttcataggtcgataggccttcctgatgtccattcaggctatgggtttgccattggca
acatggctgcttttgacatgaacgatcccgaagcagtggtttcaccaggtggtgtcggat
ttgacatcaactgtggtgtccgcttactacgtacaaatttggatgaaagtgatgtgcagc
ctgtgaaggagcagctcgcccaggctatgtttgaccacattcctgttggtgtcggctcca
aaggtgtcatccccatgaatgccaaggatttggaagaggcactagagatgggtgtggact
ggtctctccgagaaggctatgcctgggcagaggacaaggagcactgtgaggaatatggaa
gaatgctgcaggctgatccaaacaaggtctcctcaagagcaaagaagaggggcctgcctc
agctggggaccctgggagccggaaaccattacgccgagatccaggttgtggatgacattt
acaacgaatatgctgccaggaagatgggcatcgaccacaaagggcaggtgtgcgtgatga
tccacagcggcagcaggggcctgggccaccaggttgccacagatgcattggtggctatgg
aaaaagctatgaaacgggacaaaatcatagtgaatgatcgccagctggcatgtgccagga
ttgcttccgcagagggacaggattacttgaagggaatggcagctgctggaaactatgcat
ggggcaaacgctcttctatgacttttctgacaagacaggcctttgccaaagtcttcaaca
caacgccggatgacctagatatgcatgttatctatgatgtgtctcacaacattgccaaag
tggagcaacatgtggtggatggaaaggagcggactctgctggtgcacagaaagggatcga
ccagggccttcccccctcaccatcctcttatcgctgtcgattatcaactgactggacagc
ctgttttgatcggcgggactatgggcacctgtagctatgttcttactggcacagagcaag
gcatgactgagaccttcggaactacttgccacggagctggtcgcgcgctgtctcgagcca
aatctcgacgtaacttggacttccaagatgtattggacaagctggctgacatgggcattg
ccatccgtgttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaacg
tgacagatgtggttaacacctgccacgcagctggcatcagcaagaaagccattaaactga
gacccattgctgtcataaaaggctag
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