Enterobacter huaxiensis: D5067_0014200
Help
Entry
D5067_0014200 CDS
T08129
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ehu
Enterobacter huaxiensis
Pathway
ehu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ehu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D5067_0014200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ehu03019
]
D5067_0014200
03009 Ribosome biogenesis [BR:
ehu03009
]
D5067_0014200
Enzymes [BR:
ehu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D5067_0014200
Messenger RNA biogenesis [BR:
ehu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D5067_0014200
Ribosome biogenesis [BR:
ehu03009
]
Prokaryotic type
rRNA processing factors
D5067_0014200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
TFIIF_alpha
Motif
Other DBs
NCBI-ProteinID:
UNC50677
LinkDB
All DBs
Position
2947422..2950580
Genome browser
AA seq
1052 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPVASYLLNEKREAVSAIEARQGGVRCIIVPNDQMQ
TPHYHVLRVRKGEETSTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPE
IAQEKTVAKPAAQKPAAPEATKAQPEQPGLLSRFFGALKKMFAGEEVQPEQPKEAPKEAK
PERQQDRRKRQNNRRDRNDRSDRNDRGDRNERRDNRSDNSEGREQREDNRRNRRDKQQQN
VEDREVRQQAGDEPEKNKQRDEQQPRRERNRRRNDEKRQAQQDVKALNREEPVEQQDAEQ
EEHTQVMPRRKQRQLNQKVRYATESTEETAVVTADVAESATGTQLAKVDLPAVVESNVEQ
EENGEGRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLAIACASPEMASGKI
WIRYPVARPEQVVEEQPVTEEVIAPVVAVEEVVTEATASAEPQAVEPQVVEPQIVEAEAP
HAVEVVTSHPEVIAAPVDAAPQLIAEEDTAVAEEVVEDATPAVVKEDAADVVVETVTEEV
VQEVELDVEPVREAAEVKAPDVKPEPVVSAPASAHVATAPMTRAPAPEYVPEAPRNSDWV
RPEFNFDGKGSAGGHSASHQATAPATRPQSAE
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggtaaaatcacccgcattgaaccaagccttgaggctgcatttgtcgattac
ggtgctgagcgtcatggtttccttcctcttaaagaaattgcccgcgaatatttccctgca
aactacaacgctcatggccgtccgaacatcaaagatgttctgcgtgaaggtcaggaagtt
attgttcagattgataaagaagagcgtggcaacaaaggtgccgccctcactacctttatt
agcctggcggggagctatctggttctgatgcctaacaacccgcgtgcgggggggatctct
cgccgtatcgaaggtgatgaccgtaccgagctgaaagaagcgctggcaagccttgagctg
ccggacggcatggggcttatcgttcgtaccgcaggcgtgggcaaatctgccgaagcgctg
cagtgggacttaagcttccgtctgaagcactgggaagccatccagaaagccgcagaaagc
cgccctgctccgttcctgatccaccaggaaagtaacgttatcgtacgtgccttccgcgac
tatctgcgtcaggacatcggcgaaattctgattgataacccgaaagtgcttgagctggcc
cgccagcacatcgctgcgctgggtcgtccggatttcaccagcaaaattaaactgtacacc
ggtgaaatcccgctgttcagccactaccagattgaatcccagattgaatccgccttccag
cgcgaagtgcgtctgccgtccggcggttctatcgttatcgatacaaccgaagcgctgacc
gctatcgacatcaactccgcgcgtgcaacgcgtggtggcgatatcgaagagacggccttc
aacactaacctcgaagccgctgatgaaatcgcccgccagctccgcctgcgcgacctgggt
ggtctgatcgttatcgacttcatcgacatgacgccagttcgccaccagcgtgcggttgaa
aaccgtctgcgcgaagcggtgcgccaggaccgtgcacgtatccagatcagccatatttct
cgctttggcctgctggagatgtcacgtcagcgtcttagcccgtctctcggcgagtccagc
catcacgtctgtccgcgctgctccggcaccggtaccgtccgtgataacgaatcactgtct
ctgtctattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaggttcac
gccattgttccggtgccggtggcctcttacctgctgaacgaaaaacgtgaagcggtaagt
gcgattgaagcgcgccagggcggcgttcgctgcatcatcgttccaaacgatcagatgcaa
accccgcattaccatgtgctgcgcgtgcgcaaaggtgaagagacctctacgcttagctac
ctgctgccgaagctgcatgaagaagagatggcactgccgtccgatgaagagcctgccgag
cgtaaactgcctgagcagccagcattagcgaccttcatcatgccggaagcaccgccggaa
atcgcccaagaaaaaactgtcgcgaagccagctgcgcaaaaacctgctgccccagaagct
acgaaagctcagccagagcagccgggccttctgagccgtttcttcggcgcgctgaagaaa
atgtttgcgggtgaagaggttcagccggagcagccgaaagaagcaccgaaagaagccaag
ccggagcgtcagcaggatcgtcgtaaacgccagaacaaccgccgcgatcgtaatgaccgt
agcgaccgcaacgatcgtggcgatcgtaatgagcgccgggacaaccgttctgacaacagc
gaaggccgtgagcagcgcgaagacaaccgccgtaaccgtcgcgataaacaacagcagaac
gttgaagatcgtgaagttcgccagcaggcgggcgatgagcctgagaaaaacaaacagcgt
gacgagcagcagccgcgccgcgaacgtaaccgtcgtcgaaacgatgagaagcgtcaggcg
cagcaggatgttaaagccctgaaccgtgaagagcctgttgagcagcaagacgctgagcag
gaagaacatactcaggtcatgccgcgtcgtaagcagcgtcagctgaaccagaaagtccgc
tatgctaccgagtcgacggaagagactgcagtcgttacggctgacgtcgccgaaagcgca
accggtacacagctggcaaaagttgacctgccggccgtcgttgaaagcaacgttgagcag
gaagaaaacggtgaaggccgtgataacgccggcatgccgcgtcgttcacgtcgttcccca
cgtcacctgcgcgtcagcggccagcgtcgtcgtcgttaccgcgacgagcgttacccaacg
cagtctccaatgccgttagcgattgcctgcgcatcgccagaaatggcatccggcaaaatc
tggatccgctatccggttgctcgcccagagcaggttgttgaagaacagccagtgaccgaa
gaggttattgcacctgtcgtagcagttgaagaggtggtaactgaagccacagcgtcggct
gaacctcaggctgttgaacctcaggttgttgaacctcagattgttgaggcagaagcaccg
catgccgtagaagtggtaacgtcgcaccctgaagtgattgctgcaccggtggatgccgca
ccgcagcttattgccgaggaagacaccgcggtggccgaagaggttgtggaagacgctacg
cctgcagtcgtgaaagaagacgctgctgatgtggttgtcgaaaccgtgactgaagaagtc
gttcaggaagtcgagcttgacgttgagcccgtacgtgaagccgctgaggtgaaagcgcct
gacgtgaaaccagagccggttgtgtctgcacctgcgtctgcacacgttgcgactgcgcca
atgacgcgtgccccagcgcctgagtatgtgccagaagcaccgcgcaacagcgactgggtt
cgtcctgaattcaactttgacggcaaaggttctgccggtggtcacagtgcatcgcaccag
gctactgcgccagcaacccgtccgcagtctgctgaataa
DBGET
integrated database retrieval system
