Enterobacter huaxiensis: D5067_0018940
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Entry
D5067_0018940 CDS
T08129
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ehu
Enterobacter huaxiensis
Brite
KEGG Orthology (KO) [BR:
ehu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ehu03019
]
D5067_0018940 (hrpB)
Enzymes [BR:
ehu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
D5067_0018940 (hrpB)
Messenger RNA biogenesis [BR:
ehu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
D5067_0018940 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
Cas3-like_C_2
HA2_N
ResIII
DUF2732
Motif
Other DBs
NCBI-ProteinID:
UNC51554
LinkDB
All DBs
Position
complement(3936984..3939413)
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AA seq
809 aa
AA seq
DB search
MSSLPVAVVLPELLAALHNAPQVLLNAPTGAGKSTWLPLQILKDGNINGKIILLEPRRLA
ARNVAQRLAELLNEKPGETVGYRMRAETCVGPATRLEVVTEGILTRMLQNDPELTGVGLV
ILDEFHERSLQADLALALLLDVQQGLRDDLRLLIMSATLDNERLQQALPDAPVISSEGRA
FPVERRYQTLSSHQRFDEAVAIATAELLRQEPGSLLLFLPGVGEIQRVQEQLAARVGSDV
VLCPLYGALSLGDQRKAILPAPEGQRKVVLATNIAETSLTIEGIRLVVDSAQERVASFDP
RTGLTRLITQRISQASMVQRAGRAGRLEPGICLHLTSAEQAERAAQQSTPEILQSDLSGL
MMDLLQWGCPDPAQLTWLTPPPAVNLAAARTLLGLLGALDGERLSSRGQKMAALGNDPRL
AAMLLSAKGEDEIATAAKLAAILEEPPRGGSSDLAQAFSRSQSNWQQRAQQLSRRLNSRG
GSPDSDKIAALLAGAFPDRIARRRGVDGRYQLANGMGAMLDSDDALTRHEWLIAPLLLQG
SHAPDARILQAIAVDIDALTRACPQLIQQSDIVEWDDAQGTLKAFRRRQIGKLTLLTKPL
AKPSEEELHQAMLNGIREKGLSVLNWTPEAEQYRIRLHCAAKWLPEYAWPAVDDETLLAT
LEQWLLPQMSGVHSLRALKALDVKVALQNLLDWSLRQRLDSELPGHYTVPTGSRIAVRYH
EDNPPALAVRMQEMFGEATTPSIAEGRVPLVLELLSPAHRPLQITRDLGAFWAGSYRDVQ
KEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctcattgccggtcgccgtcgtccttcctgaacttctcgcagccttacacaatgcc
ccgcaggttttgctgaatgcccctacgggagccggtaaatccacctggctaccgctgcag
atcctgaaagacggcaatatcaacgggaaaatcatcctgctcgagccgcgcaggctggcg
gcgcgtaacgtggcgcagcgcctggcggagctgctgaatgaaaagcccggcgagacggtg
ggctaccggatgcgggcggaaacctgcgtcggcccggcaacgcgccttgaagtagtgacc
gagggcattctcacccggatgctgcaaaacgacccggagctgacgggcgtcgggctggtg
attctggatgaatttcacgagcgcagcctgcaggcggatctggcgctggcgctgctgctg
gacgttcagcagggcctgcgagacgacctccggctgctgatcatgtcggcgacactcgat
aacgagcgcctgcagcaggctttacctgatgccccggttatctcctcagaaggacgggcg
ttcccggtcgaacgtcgctaccagacgctttcatcccatcagcgttttgacgaagccgtc
gccattgcgacagccgagctgctgcgtcaggagcccggctcgctgctgctgtttttgccc
ggcgtgggtgagattcagcgcgtgcaggagcagcttgctgcccgcgtcggcagcgacgtg
gtgctttgccccctctacggcgcgctgtcgctgggtgaccagcgtaaagccattcttccc
gcgccagaagggcagcgtaaggtggtactggcgaccaatattgcagaaaccagcttgacc
atcgaaggcattcgcctggtggttgacagcgcgcaggagagggtggccagctttgacccg
cgcaccgggctgaccaggctgattacgcagcgtatcagccaggcgtcaatggtgcagcgt
gcaggccgcgcggggcgtcttgagcccggtatctgcctgcacttaaccagcgcggagcag
gcggaacgcgcagcgcagcagagtacccctgagattttacaaagcgacctgtccggcctg
atgatggaccttttgcagtggggctgccctgatccggctcagctgacctggcttacccca
ccgcccgccgtcaacctcgctgcggcgcgtacgctgctcggcctgcttggtgcgttagac
ggtgaaaggctgtcatcgcgcgggcagaaaatggccgcgctgggcaatgacccccgcctt
gcggcgatgctgctgtcggcaaagggcgaagacgaaattgccacggcggcaaaactggcg
gctatccttgaggagcccccgcgcggtggaagcagcgatctggcgcaggcattctctcgc
agccagagcaactggcagcagcgggcgcaacagcttagcagacggcttaacagccgtggc
ggctcccctgacagcgacaagattgccgccctgctggccggggcgtttccggacaggatc
gcgcgtcggcgcggcgtagacggccgttatcagctggcaaacggtatgggcgcgatgctg
gacagtgacgacgcgctgacgcggcacgagtggctgatcgcgccgcttttgctgcagggc
agccatgccccggacgcgcgtatcctgcaggcgatcgccgtggatattgatgccctgacg
cgcgcctgcccgcagctgattcagcagtccgacatcgtggaatgggacgatgctcaggga
acgctgaaagcgtttcgccgccgccagattggcaaactgaccctgttgacgaagccgctg
gcgaagccgtcggaagaagagttacaccaggcgatgctgaacggcatccgggaaaaaggg
ctaagcgtcctgaactggacgccggaggccgagcagtaccgcattcgtctgcactgcgcc
gctaagtggctgccggaatatgcctggccagcggtggatgatgagacgctgcttgcaacg
cttgagcagtggctgctgccgcaaatgagcggcgtacactcgctgagggcgctgaaagcg
cttgatgttaaggttgcgttacagaatttactggactggtcattacgtcaacgtctggat
agtgaactgccagggcattacactgtgccgaccggaagccggattgccgttcgttatcac
gaggataaccctccggcgctggcggtaagaatgcaggagatgtttggtgaggcaaccacg
ccttccattgcggaagggcgcgtgccgctggtactggagctgttgtctcccgcccatcgg
ccgctgcaaattacccgcgatctgggggcgttctgggccggaagctaccgggacgtgcaa
aaagagatgaaagggcggtatcccaaacacgtttggccggacgacccggcgaacacggcg
ccaacgcggcggacgaagaagtattcgtaa
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