Emiliania huxleyi: EMIHUDRAFT_422288
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Entry
EMIHUDRAFT_422288 CDS
T02915
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ehx
Emiliania huxleyi
Pathway
ehx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ehx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EMIHUDRAFT_422288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ehx03041
]
EMIHUDRAFT_422288
03009 Ribosome biogenesis [BR:
ehx03009
]
EMIHUDRAFT_422288
Enzymes [BR:
ehx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EMIHUDRAFT_422288
Spliceosome [BR:
ehx03041
]
Complex A
U2 snRNP components
U2 related factors
EMIHUDRAFT_422288
Complex B
EMIHUDRAFT_422288
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
EMIHUDRAFT_422288
Ribosome biogenesis [BR:
ehx03009
]
Eukaryotic type
90S particles
Helicases
EMIHUDRAFT_422288
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
SRP54
ABC_tran
nSTAND3
T2SSE
AAA_30
AAA_29
TsaE
AAA_7
TrwB_AAD_bind
Pox_A32
Septin
NACHT
Motif
Other DBs
NCBI-GeneID:
17257037
NCBI-ProteinID:
XP_005763399
JGI:
Emihu1_422288
UniProt:
R1D932
LinkDB
All DBs
Position
Unknown
AA seq
718 aa
AA seq
DB search
MQASGQKRKLDVGDTSGLMASTASGTGVNPYTNRPYSRRFYEILETRKRLPVWEQKDEFF
EMMRKNQTMVLVGETGSGKTTQIPSFMVDTGVTRGKRMVACTQPRRVAAMSVSKRVAEEM
DVELGEEVGYTIRFEDMTGTKTILKYMTDGMLLREARCHAQTARPPGLAMADPLLERYAA
VILDEAHERTLSTDILFGAAEEAPGSSRPRETRDHARLCRPARPHQGGRHPAARPQARGH
VRHTRRGQVPGRLHPVEIFYTPEPERDYLEAATRTACRGARTRPCHVHLCEGEGDILVFL
TGEQEIEDACRKTKQEVDNLGDQVPDVLVLPLYSTLPMDRQRQIFDPPPPPRKPGDPMGR
KIIFSTNIAETSLTIDGIVYVVDPGFAKQKVYNPRIRVESLLVSPISKASAHQRAGRAGR
TKPGKCFRLYTEVAYKTELMEQTYPEILRSNLGSDLVHFDFMDPPAPETLMRALELLNYL
GALDDEGALTELGSMMAELPAGHCPQAKMLLYSPQLSCSNEILSVVSMLNTPNPFMRPRE
AAKAADEAKARFQHVDGDHLTLLNESASWCYDNFLNARSMKSADSIRAQLMRVMNRFGLE
LKSPDFNSKEYYTNIRKCLLAGFFMQVAHLERTGHYLTVKDNQAVVALHPSTVLQHKPEW
CVYNEFVLTSKNYIRMVSDIKGDWLIELAPHYYDLKNFPSCEAKRTLERIYLKKGRAA
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcctctgggcagaagcgcaagctggacgtgggtgataccagcggcctgatggcc
tcgacggcttccggcacgggcgtcaacccatacacgaaccggccgtactcgaggcggttc
tacgagatcctcgagacgcgcaagcggctgcccgtgtgggagcagaaggacgagtttttc
gagatgatgcgcaagaaccagacgatggtgctggttggcgagacgggctcgggaaagacg
acgcagatcccgtcgttcatggtggacacgggcgtcacgcgcggcaagcgcatggtcgcg
tgcacccagccgcgccgcgtcgccgcgatgtcggtgtccaagcgcgtcgccgaggagatg
gacgtcgagctcggcgaggaggtggggtacaccatccggttcgaggacatgacgggcaca
aagacgatcctcaagtacatgaccgacggcatgctgctgcgcgaggcgagatgccacgct
cagaccgctcgcccaccgggccttgcgatggcggacccgctgctcgagcggtacgcagcc
gtgatcctagacgaggcgcacgagcgtactctctcgaccgacattctcttcggcgccgcc
gaggaggccccgggctcctcccgcccgagagagacgcgagatcacgcgagattgtgccgg
cctgctaggcctcatcaaggaggtcgccatccagcggccagacctcaagctcgtggtcat
gtccgccacactcgacgcgggcaagtgccgggccggctccacccggtcgagatcttttac
acgccggagccggagcgagactacctcgaggccgccacccggacggcgtgcaggggcgcc
aggacacgcccatgccatgtccacctctgcgagggggagggggacatcctcgtctttttg
acgggcgagcaggagatcgaggacgcgtgccgcaagaccaagcaggaggtggacaacttg
ggagaccaggttcccgacgtgctcgtgctccccctctactcgacgctgccgatggaccgc
cagcgacagatcttcgacccgccgccgccgccgcgcaagccgggcgacccgatgggccgg
aagatcatcttctcgacaaacatcgccgagacgtccctcaccatcgacggcatcgtgtac
gtcgtcgacccgggcttcgcgaagcaaaaggtgtacaacccgcgcatccgggtcgagtcg
ctgctcgtctcgccaatctcaaaggcgtcggcgcaccagcgcgccggccgcgccggccgc
accaagccgggcaagtgtttccgcctctacacggaggttgcgtacaagacggagctgatg
gagcagacgtaccccgagatcctgcgttcgaacctcggctcggacctggtgcactttgac
tttatggacccgcccgcgcccgagacgctcatgcgcgcgctcgagctgctcaactacctc
ggcgccctcgacgacgagggcgcgctcaccgagctcggctcgatgatggccgaattaccc
gcaggccactgcccgcaggcaaagatgctcctctactcgccgcagctctcgtgctcgaac
gagatcctctccgtcgtctcgatgctcaacacacccaacccgttcatgcggccccgcgag
gcggccaaggcggccgacgaggccaaggcgcgcttccagcacgtcgacggcgaccacctg
actctgctcaacgagtccgcctcgtggtgctacgacaacttcctcaacgcgcgctcgatg
aagtcggctgactccatccgcgcgcagctgatgcgcgtgatgaaccgcttcggtctcgag
ctcaagtcgccagacttcaactcgaaggagtactacaccaacatccggaagtgcctgctc
gccggcttcttcatgcaggtggcgcacctcgagcgcaccggccactacctcaccgtcaag
gacaaccaggcggtggtcgcgctgcacccgtccaccgtgctgcagcacaagcccgagtgg
tgcgtgtacaacgagtttgtgctcacctccaagaactacatccggatggtgtccgacatc
aagggcgattggctgatcgagctcgcgccgcactactacgacctcaagaacttccccagc
tgcgaggccaagcggacgctggagcgcatctacctcaagaagggaagagcagcgtag
DBGET
integrated database retrieval system