Emiliania huxleyi: EMIHUDRAFT_462873
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Entry
EMIHUDRAFT_462873 CDS
T02915
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ehx
Emiliania huxleyi
Pathway
ehx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ehx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
EMIHUDRAFT_462873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ehx03021
]
EMIHUDRAFT_462873
03019 Messenger RNA biogenesis [BR:
ehx03019
]
EMIHUDRAFT_462873
Transcription machinery [BR:
ehx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
EMIHUDRAFT_462873
Messenger RNA biogenesis [BR:
ehx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
EMIHUDRAFT_462873
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_C
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
17276464
NCBI-ProteinID:
XP_005783620
JGI:
Emihu1_462873
UniProt:
A0A0D3K606
R1F767
LinkDB
All DBs
Position
Unknown
AA seq
535 aa
AA seq
DB search
MPTPEEEEVAASYALELAELTFNSKPIINSLTMIADEERAFSHAIAGVVLRKIGSALADK
KLPIIYLLDSICKNVGAAYKNHFAPALPQTIGDAFDANGPKVRTSLQKLVDTWTGVFEPA
VVAATRARIGASAAPAATAAPAPPGAAAPPRPGPPPAAGRKRVRGGAGVARESLKIELSA
LMGRIQAHESARLPPDVQLLTFVAQAAGINESILAQTERGSAEFGAVSAQLAAMCERHAG
LAAALAAEGTPIPPSAALPEARRQPQPQPPPQQHFPPPPPQQPMAQRPPPPPPSGAPSRP
AAAPPPPPVVDVSKLLNDLAAAGVINAAAPAAAPSLTQPQPQLAMPAPFAPPLSSSTLGS
GPHSTLGALGAGGALGLGGGLGLGGLQGSSLGMNDPAISAAVHLLYRDREHAGWRGPADG
QPAAGSPPLCRRWYAPVDEWVAAAPARQAGLQHASAFATLAHDNAAAHEPAAPAAPQPLL
RAPSNAVRVECSKCGEEISMVFDDESEEWMLQGAVDAGGGVFHHYDCAAPRGGGG
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgcccactccggaggaggaggaggtggccgcgagctacgcgctggagctcgccgagctc
accttcaactccaagccgatcatcaactcgctgacaatgatcgcagacgaggagcgcgcg
tttagccacgcgatcgccggcgttgttctgcggaagatcgggtcggcactcgcagacaag
aagctgccgatcatctacctgctcgactcgatctgcaagaatgttggcgccgcgtacaag
aaccactttgcccccgcgctgccccagaccatcggcgacgcgttcgacgcaaacgggcca
aaagttcgcacctcgctgcagaaactcgtcgacacgtggaccggcgtctttgagcctgcg
gtcgtggctgcgacgcgcgcgcgcattggcgcctccgccgcgcctgcagcgacggccgcg
cccgcgccacccggcgccgccgccccgccccgtcccgggccgccgccggcagccgggcgc
aagcgcgtgaggggcggcgcgggggtggcgcgcgagtcgctcaagattgagctgagcgcg
ctgatgggccgcatccaggcacacgagtctgcgcggctgcctccggacgtgcagctgctc
acgtttgtcgcgcaagccgccgggatcaacgagtcgatcctggcgcagacggagcggggc
tccgccgagtttggcgccgtgagcgcgcagctggcggccatgtgcgagcggcacgcgggc
ctcgcagcggcgctcgccgccgaaggcacccctattccgccctctgcagccttgccagag
gcgcggcgacagccgcagccgcagccgccgccgcagcagcactttccgccgccgccgccg
cagcagccaatggcgcagcggccgccgccgccgccgccctccggcgccccctctcgcccc
gccgccgccccgccgccgccgcccgttgtcgacgtctcgaagctgctcaacgacctcgcg
gcggcgggcgtgatcaacgcggcggcgcccgccgccgcgccctcgctgacgcagccgcag
ccgcagctcgcgatgcccgccccgttcgcgccgcccctctcttcgtcgacgctcggctcc
gggccgcactcgacgctgggcgcgctgggagcgggcggcgcgctcggcctgggcggcggg
ctcggcttgggcgggctgcagggcagctcgctcggcatgaacgaccccgccatctcggcc
gccgtccacctcctctacagggacagggagcacgccggctggcgcgggcccgccgacggc
caacccgcggcgggctcgccgccgctctgccgccgctggtacgcgccggtggacgagtgg
gtggccgcggcgccggcgcggcaggcgggcctccagcacgcctccgccttcgccaccctt
gcgcacgacaacgcggcggcgcacgagccggctgcgcccgccgcgccgcagccgctgctg
cgagcgccgtcgaatgcggtgcgcgtcgagtgcagcaagtgcggcgaggagatcagcatg
gtctttgacgacgagtcggaggagtggatgttgcagggcgccgtcgacgcgggggggggc
gtcttccaccattatgactgtgcggcgccgcgcggcggcggggggtag
DBGET
integrated database retrieval system
