Emiliania huxleyi: EMIHUDRAFT_558179
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Entry
EMIHUDRAFT_558179 CDS
T02915
Symbol
RFC1
Name
(RefSeq) putative clamp loader replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
ehx
Emiliania huxleyi
Pathway
ehx03030
DNA replication
ehx03410
Base excision repair
ehx03420
Nucleotide excision repair
ehx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ehx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EMIHUDRAFT_558179 (RFC1)
03410 Base excision repair
EMIHUDRAFT_558179 (RFC1)
03420 Nucleotide excision repair
EMIHUDRAFT_558179 (RFC1)
03430 Mismatch repair
EMIHUDRAFT_558179 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ehx03032
]
EMIHUDRAFT_558179 (RFC1)
03400 DNA repair and recombination proteins [BR:
ehx03400
]
EMIHUDRAFT_558179 (RFC1)
DNA replication proteins [BR:
ehx03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
EMIHUDRAFT_558179 (RFC1)
DNA repair and recombination proteins [BR:
ehx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
EMIHUDRAFT_558179 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA
Rad17
AAA_16
RuvB_N
AAA_7
AAA_22
AAA_30
AAA_5
AAA_33
nSTAND3
Trypan_PARP
AAA_18
Zeta_toxin
AAA_14
Sigma54_activ_2
AAA_assoc_2
RCF1-5-like_lid
AAA_17
NTPase_1
Motif
Other DBs
NCBI-GeneID:
17279199
NCBI-ProteinID:
XP_005786358
JGI:
Emihu1_558179
UniProt:
A0A0D3KDU4
R1FKS5
LinkDB
All DBs
Position
Unknown
AA seq
623 aa
AA seq
DB search
MRGIDCSTGSPIESSKVNKAIGLKTKIIDEDGLFDMLRKTAPQPEPEPQPQPAPEPKPRQ
PPAAPASGGASGAAGGAADARAPAVERAPALWAEKYRPQRVEDLVGNNDHVKRLVQWAST
WEANARGGKEFRKAVLLSGPPGVGKTSAARVVLAALGYDVIELNASDTRSKNALQQTAAD
MLTNTSIAAFATGGGGGGGPAASSKLALIMDEVDGMSSGDRGGMQQLVALIKTSKLPVIC
CCNDRSSQKVKSLANHCLDLRFRKPSSREVATAFLKIATSEGYRTDLPSVEKVAVACNGD
LRGMLNLLQLWRPSGETLNGDAVAKGATNDISAGAFEVWDRFFKQATRGSPAYKPLDGRL
RDYFVDSSMTPLLVQEMYPSSPGLSVGNAPQAQLAALNRMASAAESIAESDVVGSRIVRE
QQWTLSPLQGVLACARPGFFAAGGITSQARFPAFLGRFSTANKRQRLLRECASHMQAQAS
ASKAEVRCSYVPALRSALVRPLKTSGSDGIEATLALLDEYSLTKDDYDALVELQLALGDK
KEGEDLPSAVKSALTRAYNKSHRTEPRKLGKASRAAEPSRFDEDGALDDDAEAEDEDEEA
EPVAAKPKQKAAASKGKGKAKAR
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggcatcgactgcagcaccggctcgccgatcgagtcgagcaaggtcaacaaggcg
atcggcctcaagacgaagatcatcgacgaggacggcctcttcgacatgctccgcaagacc
gcgccgcagcccgagccggagccgcagccgcagcccgcgccggagccaaagccgcgtcag
ccgcccgccgcgccggcgagcggcggggcgagcggcgcggcgggcggcgcggcggacgcg
cgcgcgccggcagtggagcgcgcgccggcgctctgggcggagaagtaccgcccgcagcgc
gtggaggacttggtcggcaacaacgaccacgtcaagcggctggtgcagtgggcctcgact
tgggaggcgaacgcgaggggcggcaaggagttccggaaggcggtgctcctgtcgggcccg
cccggcgtcggcaagacctccgcggcgcgcgtggtgctcgccgcccttggctacgacgtc
atcgagctcaacgcctccgacacgcgctcgaagaacgcgctgcagcagacggccgcagac
atgctcacaaacacgtccatcgccgccttcgccacgggcggcggcggcggcggcggcccg
gccgcgtcgtcaaagctcgcgctcatcatggacgaggtggacggcatgtcgtcgggcgac
cgcggcggcatgcagcagctcgtggcgctcatcaagacctccaagctgccggtgatctgc
tgctgcaacgaccgctcgtcccaaaaggtcaagtcgctcgccaaccactgcctcgacctg
cgcttccgcaagccctcctcccgcgaggtcgcgactgccttcctcaagatcgcgaccagc
gagggctaccgcaccgacctgccctccgtcgagaaggttgccgtcgcctgcaacggcgac
ctgcgcggcatgctcaacctgctgcagctctggcggccgagcggcgagacgctcaacggc
gacgcggtggccaagggcgcgaccaacgacatctcggcgggcgccttcgaggtgtgggac
cgcttcttcaagcaggccacccgcggctcgcccgcgtacaagccgctcgacggccggctg
cgcgactactttgtcgacagctcgatgacgccgctgctcgtgcaggagatgtacccctcc
tcgccagggctctcggtggggaacgcgccgcaggcgcagctcgccgcgctcaaccgcatg
gccagcgcggccgagtccatcgcggagagcgacgtcgtcggcagcaggatcgtgcgcgag
cagcagtggacgctctcgccgctgcagggcgtcctcgcttgcgcgcggcctggcttcttc
gcggcgggcggcatcacgtcgcaggcccggttccccgccttcctcggccgcttctcgacc
gcgaacaagcggcagcgcttgctgcgcgagtgcgcgtcgcacatgcaggcgcaggcctcc
gcctccaaggcggaggtgcgctgctcgtacgtgccggcgctgcggtcggcgctcgtccgc
ccgctgaagacgagcggctcggacgggatcgaggcgacgctcgcgctgctcgacgagtac
tcgctcaccaaggacgactacgacgcgctcgtcgaactccagctcgcgctcggcgacaag
aaggagggggaggacttgccttccgcagtcaagtcggcgctcacgcgcgcctacaacaag
tcgcaccggaccgagccgcgcaagctgggcaaggcgtcccgcgctgccgagccgagccgc
ttcgacgaggacggcgcgctggacgacgacgccgaggcggaggacgaggacgaggaggcc
gagcctgtcgccgccaagcccaagcagaaggcggccgcgtcgaaaggcaagggcaaggcg
aaggcgcgttga
DBGET
integrated database retrieval system
