Emiliania huxleyi: EMIHUDRAFT_558364
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Entry
EMIHUDRAFT_558364 CDS
T02915
Symbol
COPA1-1
Name
(RefSeq) COPA1, alpha subunit of the coatomer
KO
K05236
coatomer subunit alpha
Organism
ehx
Emiliania huxleyi
Brite
KEGG Orthology (KO) [BR:
ehx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ehx04131
]
EMIHUDRAFT_558364 (COPA1-1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ehx04147
]
EMIHUDRAFT_558364 (COPA1-1)
Membrane trafficking [BR:
ehx04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
EMIHUDRAFT_558364 (COPA1-1)
Exosome [BR:
ehx04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
EMIHUDRAFT_558364 (COPA1-1)
Exosomal proteins of bladder cancer cells
EMIHUDRAFT_558364 (COPA1-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
TPR_COPA_B
WDR55
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
WD40_RFWD3
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_SPT8
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_HPS5
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
17253092
NCBI-ProteinID:
XP_005759442
JGI:
Emihu1_558364
UniProt:
A0A0D3I6X8
R1BBF2
LinkDB
All DBs
Position
Unknown
AA seq
1250 aa
AA seq
DB search
MLTKFETKSNRVKGLAFHSSRPWVLASLHNGVVQLWDFRMGTLIDRFDEHDGPVRGVCFH
QSQPLFVTGGDDYKIKVWNYKLRRCLFSLLGHLDYIRTVQFHVEHPWIVSASDDQTIRIW
NWQQRSCVSVLTGHNHYVMCAQFHVKDDLVLSASLDQTVRVWDIGGLRKKTLPETVTPEE
RSAMGPPMPDPAGSSPGGSLSSKLGKAIPNMKVEDLFGGNDATVKYVLEGHDRGVNWASF
HSTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHINNVSCALFHPKQELIISNSEDKSI
RVWDMSKRQGVQTFRREHDRFWILAVHQESNLLAAGHDGGMIVFKLERERPAFTPISGGV
LFVKDRYVRSFDYGSGKDTALMSIRRSGNSGGPAVHYNEQENMLLVCHDTDGGSYELYSV
PRDGRSSDQSQECKRGAGSSAVFVARQRFAVLDKNRQILIKNFQNEVTKKCAPPHASTDC
LFPVGTGMLLLRSEERISLFDVQQRKAVAELSTPAVKYVVWSPDNSHVALLSKHGVVIAN
KKLEQLCMVHETIRIKSGAWDGNEVFVYSTLNHIKYCLINGDSGIIRTLDVPVYISRVSG
GTVHCLDREGKVRKMVVDVTECQFKLSLHKKEFERVIRIIKQSRLSGHAIIAYLQKKGFP
QVALHFVSDEQTRFNLAVECGNVDIALQAAQALDSKENWHRLGAEALKHGNHQVVEMAYQ
RTKDMEKLSFLYLMTGNIDKLKKMLKIAEMRSDVMGRFHNALYLGDVPERVKLLVEAGHI
PLAYITALTYGLTEQAEALSQQLTAAGLPLPEPLSPAPKMLYPALPISRDSNWPLLTVSK
GTFERTLAGGGGGGATADSGLGDAGLDLDDMDGGGGWGDDDLDLDGTGGGGGGGGGDPLG
DDADPLGGEGADGDGWGTEELDLGDLPGGSERASMGGGYYVAPNVGMPLTTRWSRESRLA
ADHAAAGSFESAMQLLQRQFGLARLEPLRGAFLALAASSQSVLAPAPSLPSLQAPLTRPG
GWPCVCISLGSLVEKLKAAYGLVTGGKFAEALDAFKSIMGSIALALALSRQQVAELKELL
GICREYITGLRLELLRRTLGADEKVRACELAAYFTHCNLQPAHMILALRSAMNISWKAKL
KRSAAAFARRLLELNPKPEFAQTARKVIQACESDLTDDFTMAYDERNPFVVCNKSFVPIY
RGSEIAYSSFCRAPYLPKFKGAVCEVDGIGQVGGEGTGFSEVDADGKFLS
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccaagttcgagaccaagtcgaaccgcgtcaagggcctcgcattccactcgagc
cggccgtgggtgctcgcgtcgctgcacaatggcgtcgtgcagctgtgggactttcggatg
gggacgctgatcgaccggtttgatgagcacgacgggccggtgcgcggggtgtgcttccac
cagagccagccgctcttcgtcaccggcggcgacgactacaagatcaaggtttggaactac
aagctgcggcgctgcctgttttcgctgctcggccacctcgactacatccgcaccgtgcag
ttccacgtggagcacccgtggatcgtgtcggcgtcggacgaccagacgatccgcatctgg
aactggcagcagcgctcgtgcgtctccgtcctcaccggccacaaccactacgtcatgtgc
gcgcagttccacgtcaaggacgacctggtgctgtccgcctcgctcgaccagacggtgcgt
gtgtgggacatcggcgggctgcgcaaaaagacgctgcccgagacggtcacgccagaggag
cgtagcgccatggggccgcccatgcccgaccccgccggcagcagccccggagggtcgctc
tcgagcaagctcggcaaggcgatcccaaacatgaaggtcgaggacctcttcggaggcaac
gacgcgacggtcaagtacgttctcgaggggcacgaccgcggcgtcaactgggcctccttc
cactccaccctcccgctcatcgtctctggcgccgacgaccggcaggtcaagctctggcgg
atgaacgagaccaaggcgtgggaggttgacacgctgcgcggccacatcaacaacgtctcg
tgcgccctcttccacccaaagcaggagctcatcatctcaaactcggaggacaagtcgatc
cgcgtgtgggacatgtccaagcggcagggcgtgcagaccttccgccgcgagcacgaccgc
ttctggatcctcgccgtgcaccaggagtccaacttgctcgccgcgggccatgacggcggc
atgatcgtcttcaagctcgagcgcgagcggccggccttcactccaatctccggtggcgtg
ctcttcgtcaaggaccggtacgtgcgctcgttcgactacggctccggcaaggacacggcg
ctcatgtcgatccgccgctcgggcaactcgggcggccccgccgtccactacaatgagcag
gagaacatgctgctcgtctgccacgacaccgacggtggctcctacgagctctactcggtg
ccgcgcgacggccgctcgtcggaccagtcgcaggagtgcaagcgcggtgcgggcagctct
gccgtgtttgtcgcgcggcagcgcttcgccgtgctggacaagaaccggcagatcctgatc
aagaacttccagaatgaggtgacgaagaagtgcgcaccgccgcacgcttcgaccgactgc
ctcttccccgtgggcaccggcatgctgctgctgcgctccgaggagcgcatctcgctcttt
gacgtgcagcagcgcaaggcggttgccgagctgtcgacgcccgccgtcaagtacgtggtc
tggtcgcccgacaactctcacgtcgccctgctctcgaagcacggcgtcgtcatcgcaaac
aagaagctcgagcagctctgcatggtgcacgagacgatccggatcaagtcgggcgcgtgg
gacggcaacgaggtgttcgtctactcgaccctcaaccacatcaagtactgcctcatcaac
ggcgattcgggcatcatccgcacgctcgacgtgcccgtctacatctcgcgcgtctctggc
ggcaccgtgcactgcctcgaccgggagggcaaggtgcgcaagatggtggttgacgtgacc
gagtgccagtttaagctctcgctgcacaagaaggagtttgagcgcgtgatccgcatcatt
aagcagtcgcgcctctcgggccacgccatcatcgcctacctgcagaagaaaggcttcccg
caggtcgccctccactttgtctcggacgagcagacgcgcttcaacctggccgtcgagtgc
ggcaacgtcgacattgcgctgcaggcggcgcaggcgctcgactcgaaggagaactggcac
cggctgggcgccgaggcgctcaagcacggcaaccaccaggtggtggagatggcctaccag
cgcaccaaggacatggagaagctctccttcctctacctgatgacgggcaacatcgacaag
ctcaaaaagatgctcaagatcgcggagatgcgctccgacgtgatggggcgcttccacaac
gcgctctacctcggcgacgtgcccgagcgcgtcaagctgctcgttgaggcgggccacatc
ccgctcgcctacatcacggccctcacgtacggcctcaccgagcaggccgaggccctctcg
cagcagctcaccgcggccgggctcccgctacccgagccgctctcgcccgcgccgaagatg
ctctaccccgcgctgcccatctctcgcgacagcaactggccgctcctcaccgtctcaaag
ggcaccttcgagcgcacgctcgccggcggcggcggcggcggcgccaccgccgactcgggc
ttgggcgacgcggggctcgaccttgacgacatggacggcggcggcgggtggggggacgac
gacctcgacctggacggcaccggcggcggcggcggcggcggcggcggcgacccgctcggc
gacgacgcggacccgctggggggcgagggcgcggatggggacgggtgggggacggaggag
ctggacctgggcgacctgccgggcggcagcgagcgcgcgtcgatgggcggcgggtactac
gtcgcgccaaacgtggggatgccgctgacgacgcgctggtcgcgcgagtcgcgcctcgcg
gcggaccacgccgccgccggctctttcgagtcggcgatgcagctgttgcagcgccagttt
gggctcgcgcggctcgagccgctgcggggcgccttcctcgcgctcgccgcatcgtcgcag
tcggtgctcgcgccggcgccgtcgctgccgtcgctgcaggcgccgctcacccggccgggc
ggctggccgtgcgtgtgcatcagcctcggctcgctcgtcgagaagctcaaggcggcgtac
ggactcgtcaccgggggcaagtttgccgaggcgctcgacgccttcaagagcatcatgggg
agcatcgccctcgcgctggcgctgtcgcggcagcaggtggcggagctcaaggagctgctc
ggcatctgccgcgagtacatcaccggcctccgcctcgagctcctccgccgcaccctcggc
gccgacgaaaaggtgcgcgcgtgcgagctcgccgcctacttcacgcactgcaacctgcag
ccggcccacatgatcctcgcgctccgctcggcgatgaacatctcgtggaaggccaagctc
aagcgctccgccgccgcctttgcgcgccggctcctcgagctcaacccgaagcccgaattc
gcgcagacggcgcgcaaggtgatccaggcttgcgagtcggatttgaccgatgacttcact
atggcgtacgacgagcgcaacccgtttgtcgtgtgcaacaagtcgtttgtgcccatttac
cgcggctcggagatcgcctactcctcgttctgcagggcgccctacctgcctaagttcaag
ggcgccgtgtgcgaggttgacgggattggccaggtcggcggcgaggggactggattcagc
gaggtagacgccgacggcaagtttctctcctga
DBGET
integrated database retrieval system
