Emiliania huxleyi: EMIHUDRAFT_59131
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Entry
EMIHUDRAFT_59131 CDS
T02915
Name
(RefSeq) hypothetical protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ehx
Emiliania huxleyi
Pathway
ehx03018
RNA degradation
ehx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ehx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EMIHUDRAFT_59131
09123 Folding, sorting and degradation
03018 RNA degradation
EMIHUDRAFT_59131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ehx03019
]
EMIHUDRAFT_59131
03041 Spliceosome [BR:
ehx03041
]
EMIHUDRAFT_59131
Messenger RNA biogenesis [BR:
ehx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
EMIHUDRAFT_59131
mRNA degradation factors
5'-3' decay
Lsm complex
EMIHUDRAFT_59131
Spliceosome [BR:
ehx03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
EMIHUDRAFT_59131
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
17274053
NCBI-ProteinID:
XP_005780936
JGI:
Emihu1_59131
UniProt:
A0A0D3JYC2
R1D0J8
LinkDB
All DBs
Position
Unknown
AA seq
126 aa
AA seq
DB search
MLPLSLLRTATGNPMLVELKNGETFNGTLDSCDNWMNIKLKEVICTSRDGDRFWRLPEVV
IRGNNIKYLRIPEEVIDMVPEEDLSMAGKGKGGKGGKGDGRGRGGKGKGDGKGRGGGGRG
AGRASG
NT seq
378 nt
NT seq
+upstream
nt +downstream
nt
atgctgccgctctcgctgctgcgaaccgcgacgggcaacccgatgctcgtcgagctcaaa
aacggcgagaccttcaacggcacgctggactcgtgcgacaactggatgaacatcaaattg
aaagaggtcatctgcacctctcgcgacggcgaccgcttctggcgcttgccggaggtggtg
atccgcggaaacaacatcaagtacttgcggatccccgaggaggtgatcgacatggtcccc
gaggaggacctctcgatggcaggcaagggcaagggcggcaagggcggcaagggcgacggc
cgcggccgggggggcaagggcaagggcgacggcaaggggcgcggcggtggcggtcgcgga
gctgggagggcgtcaggc
DBGET
integrated database retrieval system
