KEGG   Emiliania huxleyi: EMIHUDRAFT_70636
Entry
EMIHUDRAFT_70636  CDS       T02915                                 
Name
(RefSeq) hypothetical protein
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ehx  Emiliania huxleyi
Pathway
ehx03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ehx00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    EMIHUDRAFT_70636
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ehx03021]
    EMIHUDRAFT_70636
   03019 Messenger RNA biogenesis [BR:ehx03019]
    EMIHUDRAFT_70636
Transcription machinery [BR:ehx03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     EMIHUDRAFT_70636
Messenger RNA biogenesis [BR:ehx03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     EMIHUDRAFT_70636
    U7-dependent histone pre-mRNA processing factors
     EMIHUDRAFT_70636
SSDB
Motif
Pfam: Beta-Casp CPSF73-100_C Lactamase_B_6 RMMBL Lactamase_B Anti-Pycsar_Apyc1 Lactamase_B_2 DRMBL
Other DBs
NCBI-GeneID: 17281892
NCBI-ProteinID: XP_005789051
JGI: Emihu1_70636
UniProt: A0A0D3KLI7 R1DNS5
LinkDB
Position
Unknown
AA seq 708 aa
MSSTTHTVAASGGPQEVRLGEDVMTVLPLGSGCEVGRSAVVVKFKGSTVMFDCGVHPGRT
GYDALPFFDEIDPTEVDLLLVTHFHMDHCGALPFFLQKTGFGGRTFMTHPTKAVCKLLLH
DSVKIGHDDGRMWDEADLVAAMDRIELINYHQAAVLSHKGIRFWCYNAGHVLGAAMFMIE
VEPSETLPRPFRDPSATLPAAGAETPTDPPHVLIVESTYGVMSHEPRELRELRFTAAVHA
ILQRGGKCLIPVFALGRSQELLLILDAYWRDHPELHKVPLYYASGIAKRCMRIYQTYINM
MNENIRDAHATGRNPWEFEFVRNLPSSAQFNDSQPMVVMASPGMLQQGLSRELFELWCSD
RRNGLVMPGYSVVGTLANHLLSEPKEIQTSGGDWVAVNLTITYVSFSAHSDFTQTSEFIS
ATRPRHVIHVHGGEEEMKRLARALAKQYSPKEVEFLTPQNCQPVQLRFPGEKIARVVGSL
AEEEPSDGAPLEALLLLKENKYTLLAPADLHTATDLATTRLLQRPRFRFERPPAALLSAV
GRIFEQAGEEAAEEGGPSALARRWLVQGLVAVEVSPASSLAVLEWEADPIADTVADAVSA
LLLQLQAQQLPEVAAAEEPAGGGGGGEGGGGGAGGGLDFALRVLAEQFGAVEEEEAGGAR
RLQVAGHAVRLHGASLPFERIESESEFALQRVRDVLARALDACRPVAA
NT seq 2127 nt   +upstreamnt  +downstreamnt
atgagcagcacgacgcacaccgtcgcggcgagcggcgggccgcaggaggtccgcctgggc
gaggacgtgatgacggtcctgccactcggcagcggctgcgaggtcggccgctctgccgtc
gtggtcaaattcaagggctcgaccgtcatgtttgactgcggcgtgcacccgggccgcacc
ggctacgacgcgctgcccttcttcgacgagatcgacccgacggaggtggacctgctgctg
gtgacccacttccacatggaccactgcggcgcgctcccattcttcctgcaaaagacgggc
ttcggcggccgcaccttcatgacgcacccgaccaaggcggtgtgcaagctgctgctgcac
gactcggtcaagatcgggcacgacgacggccgcatgtgggacgaggccgacctcgtcgcc
gccatggaccgcatcgagctcatcaactaccaccaggccgccgtgctctcgcacaagggc
atccggttctggtgctacaacgcgggccacgtgctcggcgcggctatgttcatgatcgag
gttgaaccttccgagacccttccgagacccttccgcgacccttccgcgacccttcccgcg
gcaggtgccgagacgccgacggacccgccgcatgtgctcatcgtcgagtcgacgtacggg
gtgatgtcgcacgagccgcgcgagctgcgagagctgcgcttcaccgccgccgtgcacgcg
atcttgcagcgcggtggaaagtgcctcatcccggtctttgcgctggggcggtcgcaggag
ctgctgctcatcctcgacgcctactggcgcgatcaccccgagctgcacaaggtgcctctg
tactatgcgtctggcatcgccaagcgctgcatgcgcatctaccagacgtacatcaacatg
atgaacgagaacatccgcgacgcacacgcgacgggccgcaacccgtgggagtttgagttt
gtgcgcaacttgccctcgtctgcccagttcaacgactcgcagccgatggtcgtgatggcg
tcgccaggcatgctgcagcaaggcctgtctcgggagctctttgagctttggtgctccgac
cggcggaacgggctcgtaatgccgggctactccgtcgtcggcacgctggccaaccacctc
ctctccgagccaaaagagatccagacgagcggcggcgactgggtcgccgtcaacctcacc
atcacctacgtgtccttctctgcgcactccgactttacgcagacgtccgagttcatctcc
gccacgcggccacgccacgtcatccacgtgcacggcggcgaggaggagatgaagcgcctc
gcccgcgcgctcgccaagcagtacagcccgaaggaggtcgagttcctgacgcctcagaac
tgccagcccgtgcagcttcgcttcccgggagagaagattgcgcgtgtcgtcggctcgctg
gcggaggaggagccgtcggacggcgcgccgctcgaggcgcttctcctgctcaaggagaac
aagtacaccctgctcgcccccgcggacctccacacggccaccgacctcgcgaccacgcgg
ctgctgcagcggccccgcttccggttcgagcggccgcccgccgcgctcctctcggccgtc
ggtcgtatctttgagcaggcgggggaggaggcggcagaggagggcgggccttcggcgttg
gcacgccggtggctggtgcaggggctggtggcggtggaggtgtcgccggcgagcagcctg
gcggtgctggagtgggaggcggacccgatcgccgacacagtcgctgacgcggtgtcggcg
ctgctgctgcagctgcaggcccagcagttgcccgaggtggcggcggcggaggagcccgcg
ggaggcggcggcggcggcgagggaggcggcggcggcgcagggggcgggctcgacttcgcc
ttgcgggtgctcgcagagcagtttggcgcggtggaggaggaggaggcgggcggggcaagg
cggctgcaggtcgccggccacgctgtccggctgcacggcgcgtcgctgccgttcgagcgc
atcgagagcgagagtgagttcgcgctgcagcgcgtgcgcgacgtgctcgcgcgggcgctg
gacgcttgccggcccgtggcggcgtga

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