Edwardsiella ictaluri: NT01EI_0122
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Entry
NT01EI_0122 CDS
T00912
Name
(GenBank) ATP-dependent DNA helicase RecQ, putative
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
eic
Edwardsiella ictaluri
Pathway
eic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NT01EI_0122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eic03019
]
NT01EI_0122
03400 DNA repair and recombination proteins [BR:
eic03400
]
NT01EI_0122
Enzymes [BR:
eic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NT01EI_0122
Messenger RNA biogenesis [BR:
eic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NT01EI_0122
DNA repair and recombination proteins [BR:
eic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NT01EI_0122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACR67377
UniProt:
C5BBE2
LinkDB
All DBs
Position
119064..120893
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AA seq
609 aa
AA seq
DB search
MATAAVINTERLAEGVLKDTFGYQQFRPGQQAIVEAAIAGRDCLVVMPTGGGKSLCYQIP
ALVRDGLTIVVSPLISLMKDQVDQLQANGVNAACLNSTLSREQQQAVYAGCRSGEIRLLY
IAPERLMMDNLLDTLPQWNPTLLAVDEAHCISQWGHDFRPEYSALGQIKHRFPQMPVIAL
TATADDATRQDILRLLDLRDPLVQVSSFDRPNIRYTLIEKFKPLDQLWHFVQSQRGKSGI
IYCNSRAKVEDTAARLQSRGLSVGAYHAGLDNGRRAEVQEAFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEALLFYDPADMAWLRRCLEEKPEGAQ
KEIERHKLNAMNAFAEAQTCRRLVLLNYFGEGRQESCDNCDICLDPPKRYDGLLDAQKAL
STVARVGQRFGIGYVVEVLRGANSARIREWGHDKLSVYGIGREHSTEHWVSILRQLIHLG
LVTQNIALHSALQLTEAARPVLRGEVALQLAVPRVINLKARSSAQKSYGGNYDRKLFAKL
RKLRKAIADEENIPPYVVFNDATLLEMAEQMPLRAGDLLSINGVGQRKLERFGAPFMTLI
REHLDEGQE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcaacggcagcggtcattaatacagagaggctggccgagggggtgcttaaagacacc
ttcggttatcagcagttccgcccgggacaacaggccatcgtcgaggcggcgatagccggg
cgcgactgtctggtggtaatgccgaccgggggcggaaaatccctgtgttaccaaataccg
gcattagtacgggatgggttgaccatcgttgtttctccgctgatatccctgatgaaggat
caggtcgatcagctgcaggctaacggggtaaatgctgcctgcctgaattcgaccctgagc
cgtgaacagcagcaggcggtctatgccggttgccgcagcggggagatccgtctgctgtac
atcgccccagagcggctgatgatggataatctgctggatacgctgccgcagtggaatccc
acgctgctggcggttgatgaggcgcactgtatctcccagtgggggcacgattttcggccg
gaatacagcgcgctggggcagattaagcaccgttttccgcagatgccggtgatcgcgctg
acggcaaccgccgatgacgcgacccgccaggatatcctgcgcctgctcgatctgcgcgat
ccgctggtacaggtcagcagctttgaccgccccaatatccgctataccctgatcgaaaag
tttaaaccgctggatcagctgtggcactttgtgcagtcgcagcgcgggaagtcaggcatc
atctactgcaacagtcgcgccaaggtggaggacaccgccgcgcgcctgcaaagccgtggt
ttgagcgtcggtgcgtatcacgccgggctggacaatggtcgccgcgccgaggtgcaggag
gcgtttcagcgcgatgatttgcagattgtggtggcgacggtggcctttggcatggggatc
aacaagcccaacgttcgcttcgtggtgcactttgatattccgcgtaatatcgaatcctac
tatcaggagaccgggcgcgccgggcgcgacgggctgccggcggaagcgctgctgttttac
gacccggccgatatggcctggctgcgccgctgtctggaagagaagccagagggcgcacag
aaggagatcgagcgtcacaagctgaatgcgatgaatgcctttgccgaggcgcaaacctgc
cgccgtctggtgctgctgaactactttggcgaggggcggcaggagagctgcgataactgc
gatatctgcctggatccgcccaaacgctacgatggcctgctcgatgcgcagaaggcgctg
tctaccgtggcccgcgtcgggcagcgttttggtatcggctatgtagttgaggtgctgcgc
ggcgccaacagcgcccgcatccgcgaatgggggcacgataagctgtcggtctacggtatt
ggccgcgagcacagcaccgagcactgggtgagcatcctgcgccagctgatccatctgggg
ctggtgacacagaatattgccctgcactcggcgctacagctgacggaggcggcgcgcccg
gtactgcggggagaggtcgccctgcagctggcagttccccgggtcatcaacctcaaggcg
cgcagcagtgcacagaagagctatggcggcaactatgaccgcaaactgtttgccaagctg
cgcaaactgcgcaaggcgatcgccgacgaagagaatatcccgccctacgtcgtgtttaac
gacgcgaccctgctggaaatggcagagcagatgccgctgcgggcgggcgatctgctcagt
atcaatggcgttggccagcgtaagctggagcgctttggtgcaccgtttatgaccctgatc
cgcgaacatctggatgaggggcaggaatag
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